KEGG   PATHWAY: cfq02010
Entry
cfq02010                    Pathway                                
Name
ABC transporters - Citrobacter freundii complex sp. CFNIH3
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
cfq02010  ABC transporters
cfq02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Citrobacter freundii complex sp. CFNIH3 [GN:cfq]
Gene
C2U38_00025  [KO:K10544]
C2U38_00030  [KO:K10545] [EC:7.5.2.10]
C2U38_00035  xylF; D-xylose ABC transporter substrate-binding protein [KO:K10543]
C2U38_00175  [KO:K12368]
C2U38_00180  [KO:K12369]
C2U38_00185  [KO:K12370]
C2U38_00190  [KO:K12371]
C2U38_00195  dppF; dipeptide ABC transporter ATP-binding protein [KO:K12372]
C2U38_00670  ftsE; cell division ATP-binding protein FtsE [KO:K09812]
C2U38_00675  [KO:K09811]
C2U38_00685  [KO:K01999]
C2U38_00700  livk; high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK [KO:K01999]
C2U38_00705  [KO:K01997]
C2U38_00710  livM; high-affinity branched-chain amino acid ABC transporter permease LivM [KO:K01998]
C2U38_00715  livG; ABC transporter ATP-binding protein [KO:K01995]
C2U38_00720  [KO:K01996]
C2U38_00730  [KO:K05813]
C2U38_00735  [KO:K05814]
C2U38_00740  [KO:K05815]
C2U38_00745  ugpC; sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC [KO:K05816] [EC:7.6.2.10]
C2U38_02175  [KO:K23508]
C2U38_02180  [KO:K10820] [EC:7.5.2.9]
C2U38_02185  [KO:K23509]
C2U38_02190  [KO:K23509]
C2U38_02535  [KO:K07091]
C2U38_02540  [KO:K11720]
C2U38_03675  thiQ; thiamine ABC transporter ATP-binding protein ThiQ [KO:K02062] [EC:7.6.2.15]
C2U38_03680  thiP; thiamine/thiamine pyrophosphate ABC transporter permease ThiP [KO:K02063]
C2U38_03685  [KO:K02064]
C2U38_04090  [KO:K10829] [EC:7.2.2.16]
C2U38_04095  [KO:K23227]
C2U38_04100  [KO:K23228]
C2U38_04125  [KO:K06858]
C2U38_04320  metQ; MetQ/NlpA family lipoprotein [KO:K02073]
C2U38_04325  [KO:K02072]
C2U38_04330  metN; D-methionine ABC transporter, ATP-binding protein [KO:K02071]
C2U38_05290  fbpC; ABC transporter ATP-binding protein [KO:K02010] [EC:7.2.2.7]
C2U38_05295  [KO:K02011]
C2U38_05300  [KO:K02012]
C2U38_05320  [KO:K15551]
C2U38_05325  tauB; taurine transporter ATP-binding subunit [KO:K10831] [EC:7.6.2.7]
C2U38_05330  [KO:K15552]
C2U38_05835  [KO:K18889]
C2U38_05840  [KO:K18890]
C2U38_06160  [KO:K02073]
C2U38_06165  sfbB; virulence-associated ABC transporter ATP-binding protein SfbB [KO:K02071]
C2U38_06170  [KO:K02072]
C2U38_06840  [KO:K17203]
C2U38_06845  [KO:K17204]
C2U38_06855  [KO:K17202]
C2U38_06885  [KO:K23188]
C2U38_06890  [KO:K23187]
C2U38_06895  [KO:K23186]
C2U38_06905  [KO:K23185]
C2U38_07230  artP; amino acid ABC transporter ATP-binding protein [KO:K10004] [EC:7.4.2.1]
C2U38_07235  [KO:K10002]
C2U38_07240  [KO:K10003]
C2U38_07245  [KO:K10001]
C2U38_07860  [KO:K05776]
C2U38_07880  [KO:K02020]
C2U38_07885  modB; molybdate ABC transporter permease subunit [KO:K02018]
C2U38_07890  modC; molybdenum ABC transporter ATP-binding protein ModC [KO:K02017] [EC:7.3.2.5]
C2U38_08050  [KO:K11963]
C2U38_08215  glnQ; glutamine ABC transporter ATP-binding protein [KO:K10038] [EC:7.4.2.1]
C2U38_08220  [KO:K10037]
C2U38_08225  [KO:K10036]
C2U38_08325  [KO:K13892]
C2U38_08330  [KO:K13889]
C2U38_08335  [KO:K13890]
C2U38_08340  [KO:K13891]
C2U38_08445  [KO:K11073]
C2U38_08450  potG; polyamine ABC transporter ATP-binding protein [KO:K11076] [EC:7.6.2.16]
C2U38_08455  [KO:K11075]
C2U38_08460  [KO:K11074]
C2U38_08515  [KO:K16012]
C2U38_08520  [KO:K16013]
C2U38_08675  [KO:K11085] [EC:7.5.2.6]
C2U38_08775  [KO:K15555] [EC:7.6.2.14]
C2U38_08780  [KO:K15554]
C2U38_08790  [KO:K15553]
C2U38_08975  [KO:K15580]
C2U38_09720  [KO:K09808]
C2U38_09725  [KO:K09810] [EC:7.6.2.-]
C2U38_09730  [KO:K09808]
C2U38_09745  [KO:K11069]
C2U38_09750  [KO:K11070]
C2U38_09920  [KO:K10537]
C2U38_09925  araG; L-arabinose ABC transporter ATP-binding protein AraG [KO:K10539] [EC:7.5.2.12]
C2U38_09930  araH; L-arabinose ABC transporter permease AraH [KO:K10538]
C2U38_11015  [KO:K15580]
C2U38_11020  [KO:K15581]
C2U38_11025  [KO:K15582]
C2U38_11030  oppD; oligopeptide ABC transporter ATP-binding protein OppD [KO:K15583]
C2U38_11035  [KO:K10823]
C2U38_11260  sapF; peptide ABC transporter ATP-binding protein SapF [KO:K19230]
C2U38_11265  sapD; peptide ABC transporter ATP-binding protein SapD [KO:K19229]
C2U38_11270  sapC; peptide ABC transporter permease SapC [KO:K19228]
C2U38_11275  sapB; peptide ABC transporter permease SapB [KO:K19227]
C2U38_11280  [KO:K19226]
C2U38_11360  [KO:K10112] [EC:7.5.2.-]
C2U38_11420  [KO:K15580]
C2U38_11860  [KO:K12368]
C2U38_12310  urtE; urea ABC transporter ATP-binding subunit UrtE [KO:K11963]
C2U38_12315  urtD; urea ABC transporter ATP-binding protein UrtD [KO:K11962]
C2U38_12320  urtC; urea ABC transporter permease subunit UrtC [KO:K11961]
C2U38_12325  urtB; urea ABC transporter permease subunit UrtB [KO:K11960]
C2U38_12330  urtA; urea ABC transporter substrate-binding protein [KO:K11959]
C2U38_13015  [KO:K02020]
C2U38_13165  [KO:K02073]
C2U38_13170  [KO:K02072]
C2U38_13175  [KO:K02071]
C2U38_13405  [KO:K06074] [EC:7.6.2.8]
C2U38_13415  [KO:K06073]
C2U38_14430  [KO:K09815]
C2U38_14435  [KO:K09817] [EC:7.2.2.20]
C2U38_14440  [KO:K09816]
C2U38_14520  [KO:K11072] [EC:7.6.2.11]
C2U38_14525  [KO:K11071]
C2U38_14775  [KO:K10010] [EC:7.4.2.1]
C2U38_14780  [KO:K10009]
C2U38_14790  [KO:K02424]
C2U38_15170  [KO:K02012]
C2U38_15175  [KO:K02011]
C2U38_15180  [KO:K02010] [EC:7.2.2.7]
C2U38_15215  [KO:K02006]
C2U38_15220  [KO:K02008]
C2U38_15225  [KO:K02009]
C2U38_15230  [KO:K02007]
C2U38_15640  [KO:K09691] [EC:7.5.2.14]
C2U38_15645  [KO:K09690]
C2U38_15895  [KO:K05685] [EC:7.6.2.-]
C2U38_15980  [KO:K10000] [EC:7.4.2.1]
C2U38_15985  [KO:K09997]
C2U38_15990  [KO:K09999]
C2U38_15995  artM; arginine transporter permease subunit ArtM [KO:K09998]
C2U38_16000  [KO:K09996]
C2U38_16115  [KO:K05846]
C2U38_16120  [KO:K05847] [EC:7.6.2.9]
C2U38_16125  [KO:K05846]
C2U38_16130  [KO:K05845]
C2U38_16245  [KO:K10541]
C2U38_16250  [KO:K10542] [EC:7.5.2.11]
C2U38_16255  [KO:K10540]
C2U38_16435  [KO:K13893]
C2U38_16440  [KO:K13894]
C2U38_16445  [KO:K13895]
C2U38_16450  [KO:K13896]
C2U38_16530  ccmD; heme exporter protein CcmD [KO:K02196]
C2U38_16535  [KO:K02195]
C2U38_16540  ccmB; heme exporter protein CcmB [KO:K02194]
C2U38_16545  [KO:K02193] [EC:7.6.2.5]
C2U38_16605  [KO:K06159]
C2U38_17025  [KO:K10017] [EC:7.4.2.1]
C2U38_17030  [KO:K10015]
C2U38_17035  [KO:K10016]
C2U38_17040  [KO:K10014]
C2U38_17045  [KO:K10013]
C2U38_17880  [KO:K02045] [EC:7.3.2.3]
C2U38_17885  cysW; sulfate ABC transporter permease subunit CysW [KO:K02047]
C2U38_17890  [KO:K02046]
C2U38_17895  [KO:K02048]
C2U38_18495  [KO:K23546]
C2U38_18500  [KO:K23547]
C2U38_18505  [KO:K23545]
C2U38_19390  [KO:K02000] [EC:7.6.2.9]
C2U38_19395  [KO:K02001]
C2U38_19400  [KO:K02002]
C2U38_19675  [KO:K11604]
C2U38_19680  [KO:K11607]
C2U38_19685  [KO:K11605]
C2U38_19690  [KO:K11606]
C2U38_20225  [KO:K10439]
C2U38_20230  [KO:K10440]
C2U38_20235  [KO:K10441] [EC:7.5.2.7]
C2U38_21270  msr; ABC-F type ribosomal protection protein Msr(E) [KO:K18231]
C2U38_22085  [KO:K09688]
C2U38_22090  [KO:K09689] [EC:7.6.2.12]
C2U38_22120  [KO:K10107]
C2U38_22340  [KO:K10111] [EC:7.5.2.-]
C2U38_22875  [KO:K07122]
C2U38_22880  [KO:K07323]
C2U38_22885  mlaD; outer membrane lipid asymmetry maintenance protein MlaD [KO:K02067]
C2U38_22890  [KO:K02066]
C2U38_22895  [KO:K02065]
C2U38_22925  lptB; ABC transporter ATP-binding protein [KO:K06861] [EC:7.5.2.5]
C2U38_23395  [KO:K09969]
C2U38_23400  [KO:K09970]
C2U38_23405  [KO:K09971]
C2U38_23410  [KO:K09972] [EC:7.4.2.1]
C2U38_23565  phnC; phosphonate ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
C2U38_23570  phnD; phosphonate ABC transporter substrate-binding protein [KO:K02044]
C2U38_23575  phnE; phosphonate ABC transporter, permease protein PhnE [KO:K02042]
C2U38_23670  [KO:K10440]
C2U38_23675  [KO:K10439]
C2U38_24250  [KO:K10111] [EC:7.5.2.-]
C2U38_24255  [KO:K10108]
C2U38_24260  [KO:K10109]
C2U38_24265  [KO:K10110]
C2U38_24930  [KO:K23163]
C2U38_25805  [KO:K10439]
C2U38_25810  [KO:K10440]
C2U38_25815  [KO:K10441] [EC:7.5.2.7]
C2U38_25820  [KO:K06726] [EC:5.4.99.62]
C2U38_25920  [KO:K02040]
C2U38_25930  pstC; phosphate ABC transporter permease subunit PstC [KO:K02037]
C2U38_25935  pstA; phosphate ABC transporter, permease protein PstA [KO:K02038]
C2U38_25940  [KO:K02036] [EC:7.3.2.1]
C2U38_28105  [KO:K02066]
C2U38_28110  [KO:K02065]
C2U38_28115  [KO:K02067]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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