KEGG   PATHWAY: cmp00020
Entry
cmp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chamaesiphon minutus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cmp00020  Citrate cycle (TCA cycle)
cmp00020

Module
cmp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cmp00020]
cmp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cmp00020]
Other DBs
GO: 0006099
Organism
Chamaesiphon minutus [GN:cmp]
Gene
Cha6605_5173  citrate synthase [KO:K01647] [EC:2.3.3.1]
Cha6605_3954  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Cha6605_5304  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
Cha6605_5068  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Cha6605_3678  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Cha6605_3679  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Cha6605_4667  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Cha6605_4666  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Cha6605_4668  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
Cha6605_3355  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Cha6605_3966  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit [KO:K00162] [EC:1.2.4.1]
Cha6605_3070  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cmp00010  Glycolysis / Gluconeogenesis
cmp00053  Ascorbate and aldarate metabolism
cmp00061  Fatty acid biosynthesis
cmp00071  Fatty acid degradation
cmp00190  Oxidative phosphorylation
cmp00220  Arginine biosynthesis
cmp00250  Alanine, aspartate and glutamate metabolism
cmp00280  Valine, leucine and isoleucine degradation
cmp00350  Tyrosine metabolism
cmp00470  D-Amino acid metabolism
cmp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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