KEGG   PATHWAY: cspf00020
Entry
cspf00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Campylobacter sputorum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cspf00020  Citrate cycle (TCA cycle)
cspf00020

Module
cspf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cspf00020]
cspf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cspf00020]
cspf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cspf00020]
Other DBs
GO: 0006099
Organism
Campylobacter sputorum [GN:cspf]
Gene
CSF_0065  mfrB; methylmenaquinol:fumarate reductase, MfrB subunit [KO:K00240] [EC:1.3.5.1]
CSF_0066  mfrE; methylmenaquinol:fumarate reductase, MfrE subunit [KO:K00241]
CSF_0161  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CSF_0418  por; pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CSF_0571  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
CSF_0572  frdA; fumarate reductase, flavoprotein subunit [KO:K00233]
CSF_0573  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995]
CSF_0740  [KO:K01677] [EC:4.2.1.2]
CSF_0741  [KO:K01678] [EC:4.2.1.2]
CSF_0783  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CSF_0784  pycB; pyruvate carboxylase, subunit B [KO:K01960] [EC:6.4.1.1]
CSF_1115  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
CSF_1116  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CSF_1117  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CSF_1118  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
CSF_1119  sucD; succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CSF_1120  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
CSF_1247  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
CSF_1260  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
CSF_1309  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CSF_1408  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cspf00010  Glycolysis / Gluconeogenesis
cspf00061  Fatty acid biosynthesis
cspf00071  Fatty acid degradation
cspf00190  Oxidative phosphorylation
cspf00220  Arginine biosynthesis
cspf00250  Alanine, aspartate and glutamate metabolism
cspf00280  Valine, leucine and isoleucine degradation
cspf00350  Tyrosine metabolism
cspf00470  D-Amino acid metabolism
cspf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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