KEGG   PATHWAY: csr00020
Entry
csr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium saccharoperbutylacetonicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csr00020  Citrate cycle (TCA cycle)
csr00020

Module
csr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:csr00020]
csr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csr00020]
Other DBs
GO: 0006099
Organism
Clostridium saccharoperbutylacetonicum [GN:csr]
Gene
Cspa_c02260  fumA; fumarate hydratase alpha subunit FumA [KO:K01677] [EC:4.2.1.2]
Cspa_c02270  fumB; fumarate hydratase beta subunit FumB [KO:K01678] [EC:4.2.1.2]
Cspa_c33280  nifJ1; pyruvate-flavodoxin oxidoreductase NifJ [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Cspa_c35070  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Cspa_c35080  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Cspa_c37340  pckA1; phosphoenolpyruvate carboxykinase [ATP] 1 [KO:K01610] [EC:4.1.1.49]
Cspa_c44110  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
Cspa_c44250  pckA2; phosphoenolpyruvate carboxykinase [ATP] 1 [KO:K01610] [EC:4.1.1.49]
Cspa_c45990  nifJ2; pyruvate-flavodoxin oxidoreductase NifJ [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Cspa_c56330  pyc; pyruvate carboxylase Pyc [KO:K01958] [EC:6.4.1.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csr00010  Glycolysis / Gluconeogenesis
csr00053  Ascorbate and aldarate metabolism
csr00061  Fatty acid biosynthesis
csr00071  Fatty acid degradation
csr00190  Oxidative phosphorylation
csr00220  Arginine biosynthesis
csr00250  Alanine, aspartate and glutamate metabolism
csr00280  Valine, leucine and isoleucine degradation
csr00350  Tyrosine metabolism
csr00470  D-Amino acid metabolism
csr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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