KEGG   PATHWAY: dre03050
Entry
dre03050                    Pathway                                
Name
Proteasome - Danio rerio (zebrafish)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
dre03050  Proteasome
dre03050

Other DBs
GO: 0000502
Organism
Danio rerio (zebrafish) [GN:dre]
Gene
100331481  psmb11b; proteasome subunit beta type-11b [KO:K11598] [EC:3.4.25.1]
171585  psma6a; proteasome subunit alpha type-6a isoform 2 [KO:K02730] [EC:3.4.25.1]
30387  psmb5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
30388  psmb6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
30647  psme2; proteasome activator complex subunit 2 [KO:K06697]
30648  psme1; proteasome activator complex subunit 1 [KO:K06696]
30649  psme3; proteasome activator complex subunit 3 [KO:K06698]
30665  psmb9a; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
30666  psmb8a; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
321585  psmc6; 26S proteasome regulatory subunit 10B [KO:K03064]
321898  psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
321947  psmc3; 26S proteasome regulatory subunit 6A [KO:K03065]
322265  psmd11b; 26S proteasome non-ATPase regulatory subunit 11B [KO:K03036]
322269  sem1; 26S proteasome complex subunit SEM1 [KO:K10881]
326687  psma4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
326884  psmc4; 26S proteasome regulatory subunit 6B [KO:K03063]
327330  psmd7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
336786  psmc1a; proteasome 26S subunit, ATPase 1a [KO:K03062]
393261  psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
393518  psmd2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
393544  psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
393922  psmd13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
393941  psmc2; 26S proteasome regulatory subunit 7 [KO:K03061]
403011  psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
403015  psma2b; proteasome_alpha_type_2 domain-containing protein [KO:K02726] [EC:3.4.25.1]
405790  ifng1; interferon gamma 1 precursor [KO:K04687]
406445  psma8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
415181  psmc1b; proteasome 26S subunit, ATPase 1b [KO:K03062]
415202  psmd4a; 26S proteasome non-ATPase regulatory subunit 4a [KO:K03029]
415221  psmd8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
436709  psmd9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
436816  psmb10; proteasome subunit beta type-10 [KO:K02739] [EC:3.4.25.1]
436820  psmf1; proteasome inhibitor PI31 subunit [KO:K06700]
436862  psma6b; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
436882  psmb2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
445030  pomP; proteasome maturation protein [KO:K11599]
445033  psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
445285  psmc5; 26S proteasome regulatory subunit 8 [KO:K03066]
445413  psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
446135  psmb11a; proteasome subunit beta type-11a [KO:K11598] [EC:3.4.25.1]
503934  psmd11a; 26S proteasome non-ATPase regulatory subunit 11A [KO:K03036]
550287  psmd4b; 26S proteasome non-ATPase regulatory subunit 4b [KO:K03029]
550499  psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
553346  psme4b; proteasome activator complex subunit 4B [KO:K06699]
554153  psma2a; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
554967  psmd1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
564370  psma3; proteasome subunit alpha type-3 [KO:K02727] [EC:3.4.25.1]
573095  psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
64278  psmb7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
64279  psmb12; proteasome 20S subunit beta 12 [KO:K02738] [EC:3.4.25.1]
64280  psmb13a; proteasome 20S subunit beta 13a [KO:K02739] [EC:3.4.25.1]
793897  psme4a; proteasome activator complex subunit 4A [KO:K06699]
796450  adrm1; proteasomal ubiquitin receptor ADRM1 [KO:K06691]
799058  psmd14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
83917  psma6l; proteasome 20S subunit alpha 6, like [KO:K02730] [EC:3.4.25.1]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
dre04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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