KEGG   PATHWAY: dsp03050
Entry
dsp03050                    Pathway                                
Name
Proteasome - Dipodomys spectabilis (banner-tailed kangaroo rat)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
dsp03050  Proteasome
dsp03050

Other DBs
GO: 0000502
Organism
Dipodomys spectabilis (banner-tailed kangaroo rat) [GN:dsp]
Gene
122094924  Psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
122095018  Psmd13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
122097063  Psmd2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
122097243  Psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
122097397  Psmc4; 26S proteasome regulatory subunit 6B [KO:K03063]
122097575  Psmd8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
122098523  Psmd9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
122100662  [KO:K02730] [EC:3.4.25.1]
122102009  Psmc5; 26S proteasome regulatory subunit 8 [KO:K03066]
122103102  Psme3; proteasome activator complex subunit 3 [KO:K06698]
122103275  Psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
122103514  Psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
122104344  Psma8; proteasome subunit alpha-type 8 isoform X1 [KO:K02731] [EC:3.4.25.1]
122105126  Psmc3; 26S proteasome regulatory subunit 6A [KO:K03065]
122106459  Psmc6; 26S proteasome regulatory subunit 10B [KO:K03064]
122106531  Psma6; proteasome subunit alpha type-6 [KO:K02730] [EC:3.4.25.1]
122107111  Psmb7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
122107359  Psmd1; 26S proteasome non-ATPase regulatory subunit 1 [KO:K03032]
122108147  Psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
122108623  Psmb6; proteasome subunit beta type-6 isoform X1 [KO:K02738] [EC:3.4.25.1]
122109213  Psmd4; 26S proteasome non-ATPase regulatory subunit 4 isoform X1 [KO:K03029]
122109362  Psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
122109968  [KO:K10881]
122110090  Psma3; proteasome subunit alpha type-3 isoform X1 [KO:K02727] [EC:3.4.25.1]
122110797  Psmd14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
122111139  Psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
122111295  Psmb2; proteasome subunit beta type-2 [KO:K02734] [EC:3.4.25.1]
122111480  Psmb9; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
122111483  Psmb8; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
122111905  Psmc2; 26S proteasome regulatory subunit 7 [KO:K03061]
122111954  Sem1; 26S proteasome complex subunit SEM1 [KO:K10881]
122112760  [KO:K11599]
122113383  Psme1; proteasome activator complex subunit 1 [KO:K06696]
122113384  Psme2; proteasome activator complex subunit 2 isoform X1 [KO:K06697]
122113388  Psmb5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
122113421  Psmb11; proteasome subunit beta type-11 [KO:K11598] [EC:3.4.25.1]
122117429  Psme4; proteasome activator complex subunit 4 [KO:K06699]
122117796  Psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
122118095  Psmd11; 26S proteasome non-ATPase regulatory subunit 11 [KO:K03036]
122118644  Psmc1; 26S proteasome regulatory subunit 4 [KO:K03062]
122120464  Psmf1; proteasome inhibitor PI31 subunit [KO:K06700]
122120759  Psma2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
122123386  Psma4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
122124303  Ifng; interferon gamma [KO:K04687]
122124990  Adrm1; proteasomal ubiquitin receptor ADRM1 [KO:K06691]
122124999  Psma7; proteasome subunit alpha type-7 [KO:K02731] [EC:3.4.25.1]
122126156  Psmb10; proteasome subunit beta type-10 isoform X1 [KO:K02733] [EC:3.4.25.1]
122126198  Psmd7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
dsp04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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