KEGG   PATHWAY: dsp04120
Entry
dsp04120                    Pathway                                
Name
Ubiquitin mediated proteolysis - Dipodomys spectabilis (banner-tailed kangaroo rat)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
dsp04120  Ubiquitin mediated proteolysis
dsp04120

Other DBs
GO: 0016567
Organism
Dipodomys spectabilis (banner-tailed kangaroo rat) [GN:dsp]
Gene
122115862  LOW QUALITY PROTEIN: polyubiquitin-like [KO:K04551]
122098475  Ubc; polyubiquitin-C [KO:K08770]
122100782  Ubb; polyubiquitin-B [KO:K08770]
122100897  Uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
122103376  ubiquitin-40S ribosomal protein S27a [KO:K02977]
122120078  ubiquitin-40S ribosomal protein S27a-like [KO:K02977]
122117494  Rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
122111717  Uba1; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
122115519  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
122115520  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
122124492  ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
122125752  Sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
122097457  Uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
122108015  Uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
122095712  Uba7; ubiquitin-like modifier-activating enzyme 7 isoform X1 [KO:K10698] [EC:6.2.1.45]
122106662  Uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
122128205  Ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
122115502  Ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
122120333  Ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
122127103  Ube2d3; ubiquitin-conjugating enzyme E2 D3 [KO:K06689] [EC:2.3.2.23]
122128052  Ube2d4; ubiquitin-conjugating enzyme E2 D4 isoform X1 [KO:K06689] [EC:2.3.2.23]
122096800  ubiquitin-conjugating enzyme E2 D3-like [KO:K06689] [EC:2.3.2.23]
122121068  ubiquitin-conjugating enzyme E2 D4-like [KO:K06689] [EC:2.3.2.23]
122113952  ubiquitin-conjugating enzyme E2 D2-like [KO:K06689] [EC:2.3.2.23]
122122326  Ube2d1; ubiquitin-conjugating enzyme E2 D1 [KO:K06689] [EC:2.3.2.23]
122114499  ubiquitin-conjugating enzyme E2 D3-like [KO:K06689] [EC:2.3.2.23]
122118143  Ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
122115047  Ube2e3; ubiquitin-conjugating enzyme E2 E3 [KO:K20217] [EC:2.3.2.23]
122108131  ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
122108183  ubiquitin-conjugating enzyme E2 E2 [KO:K20217] [EC:2.3.2.23]
122128041  Ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
122118140  NEDD8-conjugating enzyme UBE2F-like [KO:K10687] [EC:2.3.2.34]
122124856  Ube2g1; ubiquitin-conjugating enzyme E2 G1 [KO:K10575] [EC:2.3.2.23]
122101291  Ube2g2; ubiquitin-conjugating enzyme E2 G2 isoform X1 [KO:K04555] [EC:2.3.2.23]
122121751  Ube2h; ubiquitin-conjugating enzyme E2 H isoform X1 [KO:K10576] [EC:2.3.2.23]
122123798  Ube2i; SUMO-conjugating enzyme UBC9 [KO:K10577]
122107727  Ube2j1; ubiquitin-conjugating enzyme E2 J1 isoform X1 [KO:K10578] [EC:2.3.2.23]
122127389  Ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
122106640  Ube2k; ubiquitin-conjugating enzyme E2 K isoform X1 [KO:K04649] [EC:2.3.2.23]
122095894  Ube2l3; ubiquitin-conjugating enzyme E2 L3 [KO:K04552] [EC:2.3.2.23]
122112542  ubiquitin-conjugating enzyme E2 L3-like [KO:K04552] [EC:2.3.2.23]
122104985  Ube2l6; ubiquitin/ISG15-conjugating enzyme E2 L6 [KO:K04553] [EC:2.3.2.23]
122110710  Ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
122119172  Ube2n; ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
122096045  ubiquitin-conjugating enzyme E2 N [KO:K10580] [EC:2.3.2.23]
122112388  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
122112390  ubiquitin-conjugating enzyme E2 N-like [KO:K10580] [EC:2.3.2.23]
122128372  Ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme isoform X1 [KO:K10581] [EC:2.3.2.24]
122121007  Ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
122123384  Ube2q2; ubiquitin-conjugating enzyme E2 Q2 isoform X1 [KO:K10582] [EC:2.3.2.23]
122109153  Ube2q1; ubiquitin-conjugating enzyme E2 Q1 [KO:K10582] [EC:2.3.2.23]
122121476  Ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
122122855  Cdc34; ubiquitin-conjugating enzyme E2 R1 [KO:K02207] [EC:2.3.2.23]
122110639  Ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
122109902  Ube2u; ubiquitin-conjugating enzyme E2 U isoform X1 [KO:K10584] [EC:2.3.2.23]
122108698  Ube2w; ubiquitin-conjugating enzyme E2 W [KO:K10688] [EC:2.3.2.23 2.3.2.25]
122100736  Ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
122122467  Birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
122123004  Ube3a; ubiquitin-protein ligase E3A isoform X1 [KO:K10587] [EC:2.3.2.26]
122099014  Ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
122101252  Ube3c; ubiquitin-protein ligase E3C isoform X1 [KO:K10589] [EC:2.3.2.26]
122128374  Smurf2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
122113841  Smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
122120175  Itch; E3 ubiquitin-protein ligase Itchy homolog [KO:K05632] [EC:2.3.2.26]
122096724  Wwp1; NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [KO:K05633] [EC:2.3.2.26]
122126118  Wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 [KO:K05630] [EC:2.3.2.26]
122107337  Trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
122106315  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase NEDD4-like [KO:K10591] [EC:2.3.2.26]
122114476  Nedd4; E3 ubiquitin-protein ligase NEDD4 isoform X1 [KO:K10591] [EC:2.3.2.26]
122104283  Nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
122112047  Huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
122102315  Ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
122114681  Herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
122122963  Herc2; E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
122127107  Herc3; probable E3 ubiquitin-protein ligase HERC3 isoform X1 [KO:K10614] [EC:2.3.2.26]
122122253  Herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
122110343  Ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
122121414  Ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
122098141  Stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
122095911  Ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 [KO:K10598] [EC:5.2.1.8]
122108186  RING-type E3 ubiquitin-protein ligase PPIL2-like [KO:K10598] [EC:5.2.1.8]
122105136  Prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
122120274  Ubox5; RING finger protein 37 isoform X1 [KO:K10600]
122124078  Mdm2; E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
122110362  Cbl; E3 ubiquitin-protein ligase CBL [KO:K04707] [EC:2.3.2.27]
122105546  Cblb; E3 ubiquitin-protein ligase CBL-B isoform X1 [KO:K22517] [EC:2.3.2.27]
122125696  Cblc; E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
122116126  Prkn; E3 ubiquitin-protein ligase parkin [KO:K04556] [EC:2.3.2.31]
122119381  Siah1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
122123005  Pml; protein PML isoform X1 [KO:K10054] [EC:2.3.2.-]
122117775  Traf6; TNF receptor-associated factor 6 isoform X1 [KO:K03175] [EC:2.3.2.27]
122117204  Map3k1; mitogen-activated protein kinase kinase kinase 1 [KO:K04416] [EC:2.7.11.25]
122103771  Cop1; E3 ubiquitin-protein ligase COP1 isoform X1 [KO:K10143] [EC:2.3.2.27]
122106685  Rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
122110391  Birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
122109926  E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
122122922  Pias1; E3 SUMO-protein ligase PIAS1 [KO:K04706] [EC:2.3.2.-]
122104272  Pias2; E3 SUMO-protein ligase PIAS2 isoform X1 [KO:K16063] [EC:2.3.2.-]
122109416  Pias3; E3 SUMO-protein ligase PIAS3 isoform X1 [KO:K16064] [EC:2.3.2.-]
122099295  Pias4; E3 SUMO-protein ligase PIAS4 [KO:K16065] [EC:2.3.2.27]
122104936  Syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
122107016  Nhlrc1; E3 ubiquitin-protein ligase NHLRC1 [KO:K10602] [EC:2.3.2.27]
122102858  Aire; LOW QUALITY PROTEIN: autoimmune regulator [KO:K10603]
122123688  Mgrn1; E3 ubiquitin-protein ligase MGRN1 isoform X1 [KO:K10604] [EC:2.3.2.27]
122103440  Brca1; breast cancer type 1 susceptibility protein isoform X1 [KO:K10605] [EC:2.3.2.27]
122117449  Fancl; E3 ubiquitin-protein ligase FANCL [KO:K10606] [EC:2.3.2.27]
122108553  Mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
122107116  Trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
122117143  Trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
122123619  Rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
122105888  Cul1; cullin-1 [KO:K03347]
122112677  S-phase kinase-associated protein 1-like [KO:K03094]
122115441  Skp1; S-phase kinase-associated protein 1 [KO:K03094]
122115762  Btrc; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
122101862  Fbxw11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
122117008  Skp2; S-phase kinase-associated protein 2 [KO:K03875]
122127109  Fbxw7; F-box/WD repeat-containing protein 7 isoform X1 [KO:K10260]
122121471  Fbxo2; F-box only protein 2 [KO:K10099]
122117025  Fbxo4; F-box only protein 4 [KO:K10291]
122113139  Cul2; cullin-2 [KO:K03870]
122108699  Eloc; elongin-C [KO:K03872]
122099637  elongin-B-like [KO:K03873]
122099638  elongin-B-like [KO:K03873]
122123804  Elob; elongin-B [KO:K03873]
122108173  Vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
122107347  Cul3; cullin-3 isoform X1 [KO:K03869]
122119563  Keap1; kelch-like ECH-associated protein 1 isoform X1 [KO:K10456]
122118936  Klhl9; kelch-like protein 9 [KO:K10447]
122128215  Klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
122122309  Rhobtb1; rho-related BTB domain-containing protein 1 [KO:K07868]
122123507  Rhobtb2; rho-related BTB domain-containing protein 2 isoform X1 [KO:K07868]
122095395  Cul4b; cullin-4B isoform X1 [KO:K10609]
122122675  Cul4a; cullin-4A [KO:K10609]
122104883  Ddb1; DNA damage-binding protein 1 [KO:K10610]
122104989  Ddb2; DNA damage-binding protein 2 [KO:K10140]
122117197  Ercc8; DNA excision repair protein ERCC-8 isoform X1 [KO:K10570]
122118612  DET1 homolog [KO:K10571]
122123956  Det1; DET1 homolog isoform X1 [KO:K10571]
122095293  Rnf7; RING-box protein 2 isoform X1 [KO:K10611]
122110401  Cul5; cullin-5 [KO:K10612]
122123828  Socs1; suppressor of cytokine signaling 1 [KO:K04694]
122096608  Socs3; suppressor of cytokine signaling 3 [KO:K04696]
122101485  Cul7; cullin-7 isoform X1 [KO:K10613]
122099058  Fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
122099415  Anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
122102556  Anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
122106206  Cdc20; cell division cycle protein 20 homolog [KO:K03363]
122119814  Fzr1; fizzy-related protein homolog [KO:K03364]
122121381  Anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
122101637  Cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
122104082  Anapc4; anaphase-promoting complex subunit 4 isoform X1 [KO:K03351]
122128263  LOW QUALITY PROTEIN: anaphase-promoting complex subunit 4-like [KO:K03351]
122100140  LOW QUALITY PROTEIN: anaphase-promoting complex subunit 4-like [KO:K03351]
122098584  Anapc5; LOW QUALITY PROTEIN: anaphase-promoting complex subunit 5 [KO:K03352]
122122797  Cdc16; cell division cycle protein 16 homolog [KO:K03353]
122098534  Anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
122118117  Cdc23; cell division cycle protein 23 homolog isoform X1 [KO:K03355]
122127137  Anapc10; anaphase-promoting complex subunit 10 [KO:K03357]
122122286  Cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
122117749  anaphase-promoting complex subunit CDC26-like [KO:K03359]
122101347  Anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
122114345  Anapc15; anaphase-promoting complex subunit 15 isoform X1 [KO:K25228]
122116531  Anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
dsp03050  Proteasome
KO pathway
ko04120   
LinkDB

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