KEGG   PATHWAY: ebe00920
Entry
ebe00920                    Pathway                                
Name
Sulfur metabolism - Escherichia coli BL21(DE3)
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
ebe00920  Sulfur metabolism
ebe00920

Module
ebe_M00021  Cysteine biosynthesis, serine => cysteine [PATH:ebe00920]
ebe_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:ebe00920]
Other DBs
GO: 0006790
Organism
Escherichia coli BL21(DE3) [GN:ebe]
Gene
B21_02286  cysP; cysP, subunit of thiosulfate ABC transporter [KO:K02048]
B21_03751  sbp; sbp, subunit of sulfate ABC transporter [KO:K23163]
B21_02285  cysU; cysU, subunit of thiosulfate ABC transporter and sulfate ABC transporter [KO:K02046]
B21_02284  cysW; cysW, subunit of thiosulfate ABC transporter and sulfate ABC transporter [KO:K02047]
B21_02283  cysA; cysA, subunit of thiosulfate ABC transporter and sulfate ABC transporter [KO:K02045] [EC:7.3.2.3]
B21_00319  tauA; tauA, subunit of taurine ABC transporter [KO:K15551]
B21_00321  tauC; tauC, subunit of taurine ABC transporter [KO:K15552]
B21_00320  tauB; tauB, subunit of taurine ABC transporter [KO:K10831] [EC:7.6.2.7]
B21_00322  tauD; taurine dioxygenase monomer, subunit of taurine dioxygenase [KO:K03119] [EC:1.14.11.17]
B21_00947  ssuA; ssuA, subunit of aliphatic sulfonate ABC transporter [KO:K15553]
B21_00945  ssuC; ssuC, subunit of aliphatic sulfonate ABC transporter [KO:K15554]
B21_00944  ssuB; ssuB, subunit of aliphatic sulfonate ABC transporter [KO:K15555] [EC:7.6.2.14]
B21_00946  ssuD; alkanesulfonate monooxygenase, subunit of alkanesulfonate monooxygenase, FMNH[2]-dependent [KO:K04091] [EC:1.14.14.5 1.14.14.34]
B21_00948  ssuE; NAD(P)H-dependent FMN reductase monomer, subunit of NADP(H)-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
B21_02566  cysN; cysN, subunit of sulfate adenylyltransferase [KO:K00956] [EC:2.7.7.4]
B21_02567  cysD; cysD, subunit of sulfate adenylyltransferase [KO:K00957] [EC:2.7.7.4]
B21_02565  cysC; adenylylsulfate kinase [KO:K00860] [EC:2.7.1.25]
B21_04049  cysQ; adenosine-3'(2'),5'-bisphosphate nucleotidase [KO:K01082] [EC:3.1.3.7]
B21_02570  cysH; 3'-phospho-adenylylsulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
B21_02572  cysJ; sulfite reductase, flavoprotein subunit, subunit of sulfite reductase, flavoprotein subunit complex and sulfite reductase [KO:K00380] [EC:1.8.1.2]
B21_02571  cysI; sulfite reductase, hemoprotein subunit, subunit of sulfite reductase [KO:K00381] [EC:1.8.1.2]
B21_01629  ydhU; predicted cytochrome [KO:K08354]
B21_02375  sseA; 3-mercaptopyruvate:cyanide sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
B21_03228  glpE; thiosulfate sulfurtransferase [KO:K02439] [EC:2.8.1.1]
B21_03416  cysE; serine acetyltransferase monomer, subunit of serine acetyltransferase and bifunctional CysEK cysteine biosynthesis complex [KO:K00640] [EC:2.3.1.30]
B21_02275  cysK; cysK, subunit of cysteine synthase A and bifunctional CysEK cysteine biosynthesis complex [KO:K01738] [EC:2.5.1.47]
B21_03845  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
B21_03774  metB; O-succinylhomoserine(thiol)-lyase / O-succinylhomoserine lyase [KO:K01739] [EC:2.5.1.48]
B21_00905  dmsA; dimethyl sulfoxide reductase, chain A, subunit of dimethyl sulfoxide reductase [KO:K07306] [EC:1.8.5.3]
B21_00906  dmsB; dimethyl sulfoxide reductase, chain B, subunit of dimethyl sulfoxide reductase [KO:K07307]
B21_00907  dmsC; dimethyl sulfoxide reductase, chain C, subunit of dimethyl sulfoxide reductase [KO:K07308]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
ebe00260  Glycine, serine and threonine metabolism
ebe00270  Cysteine and methionine metabolism
ebe00680  Methane metabolism
ebe00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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