KEGG   PATHWAY: ecol02010
Entry
ecol02010                   Pathway                                
Name
ABC transporters - Escherichia coli LY180
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
ecol02010  ABC transporters
ecol02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Escherichia coli LY180 [GN:ecol]
Gene
LY180_00325  ssuB; aliphatic sulfonate ABC transporter ATP-binding protein [KO:K02062] [EC:7.6.2.15]
LY180_00330  thiP; thiamine transporter membrane protein [KO:K02063]
LY180_00335  tbpA; thiamine ABC transporter substrate-binding protein [KO:K02064]
LY180_00735  [KO:K10829] [EC:7.2.2.16]
LY180_00740  [KO:K23227]
LY180_00745  [KO:K23228]
LY180_00770  [KO:K06858]
LY180_00960  metQ; methionine ABC transporter substrate-binding protein [KO:K02073]
LY180_00965  [KO:K02072]
LY180_00970  glnQ; glutamine ABC transporter ATP-binding protein [KO:K02071]
LY180_02210  tauA; taurine ABC transporter substrate-binding protein [KO:K15551]
LY180_02215  ssuB; aliphatic sulfonate ABC transporter ATP-binding protein [KO:K10831] [EC:7.6.2.7]
LY180_02220  [KO:K15552]
LY180_02585  [KO:K18889]
LY180_02590  [KO:K18890]
LY180_03190  [KO:K23188]
LY180_03195  [KO:K23187]
LY180_03200  [KO:K23186]
LY180_03210  [KO:K23185]
LY180_03510  [KO:K10004] [EC:7.4.2.1]
LY180_03515  [KO:K10002]
LY180_03520  [KO:K10003]
LY180_03525  [KO:K10001]
LY180_04005  [KO:K05776]
LY180_04020  modA; molybdenum ABC transporter substrate-binding protein [KO:K02020]
LY180_04025  modB; molybdate ABC transporter permease [KO:K02018]
LY180_04030  modC; molybdate ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
LY180_04265  [KO:K10038] [EC:7.4.2.1]
LY180_04270  glnP; glutamine ABC transporter permease [KO:K10037]
LY180_04275  glnH; amino acid ABC transporter substrate-binding protein [KO:K10036]
LY180_04370  [KO:K13892]
LY180_04375  [KO:K13889]
LY180_04380  [KO:K13890]
LY180_04385  [KO:K13891]
LY180_04495  [KO:K11073]
LY180_04500  potA; putrescine/spermidine ABC transporter ATPase [KO:K11076] [EC:7.6.2.16]
LY180_04505  [KO:K11075]
LY180_04510  [KO:K11074]
LY180_04525  [KO:K09996]
LY180_04530  artM; arginine transporter permease subunit ArtM [KO:K09998]
LY180_04535  [KO:K09999]
LY180_04540  [KO:K09997]
LY180_04545  [KO:K10000] [EC:7.4.2.1]
LY180_04625  [KO:K05685] [EC:7.6.2.-]
LY180_04660  [KO:K16012]
LY180_04665  [KO:K16013]
LY180_04800  [KO:K11085] [EC:7.5.2.6]
LY180_04905  potA; putrescine/spermidine ABC transporter ATPase [KO:K15555] [EC:7.6.2.14]
LY180_04910  ssuC; sulfonate ABC transporter [KO:K15554]
LY180_04920  [KO:K15553]
LY180_05785  [KO:K09808]
LY180_05790  [KO:K09810] [EC:7.6.2.-]
LY180_05795  [KO:K09808]
LY180_05820  potD; putrescine/spermidine ABC transporter substrate-binding protein [KO:K11069]
LY180_05825  potC; putrescine/spermidine ABC transporter permease [KO:K11070]
LY180_05830  potB; putrescine/spermidine ABC transporter permease [KO:K11071]
LY180_05835  potA; putrescine/spermidine ABC transporter ATPase [KO:K11072] [EC:7.6.2.11]
LY180_06320  [KO:K15580]
LY180_06325  oppB; peptide ABC transporter permease [KO:K15581]
LY180_06330  [KO:K15582]
LY180_06335  dppD; peptide ABC transporter ATP-binding protein [KO:K15583]
LY180_06340  dppF; peptide ABC transporter ATP-binding protein [KO:K10823]
LY180_06570  dppF; peptide ABC transporter ATP-binding protein [KO:K19230]
LY180_06575  dppD; peptide ABC transporter ATP-binding protein [KO:K19229]
LY180_06580  [KO:K19228]
LY180_06585  [KO:K19227]
LY180_06590  [KO:K19226]
LY180_06710  [KO:K10112] [EC:7.5.2.-]
LY180_06775  [KO:K15580]
LY180_07750  [KO:K02471]
LY180_08895  [KO:K06074] [EC:7.6.2.8]
LY180_08905  [KO:K06073]
LY180_09665  znuA; zinc ABC transporter substrate-binding protein [KO:K09815]
LY180_09670  znuC; zinc transporter [KO:K09817] [EC:7.2.2.20]
LY180_09675  znuB; zinc transporter [KO:K09816]
LY180_09860  araH; arabinose ABC transporter permease [KO:K10538]
LY180_09865  araG; arabinose ABC transporter ATP-binding protein [KO:K10539] [EC:7.5.2.12]
LY180_09870  [KO:K10537]
LY180_09950  [KO:K10010] [EC:7.4.2.1]
LY180_09955  [KO:K10009]
LY180_09965  [KO:K02424]
LY180_11130  [KO:K05846]
LY180_11135  [KO:K05847] [EC:7.6.2.9]
LY180_11140  [KO:K05846]
LY180_11145  [KO:K05845]
LY180_11230  mglC; beta-methylgalactoside transporter [KO:K10541]
LY180_11235  [KO:K10542] [EC:7.5.2.11]
LY180_11240  [KO:K10540]
LY180_11380  [KO:K13893]
LY180_11385  [KO:K13894]
LY180_11390  [KO:K13895]
LY180_11395  [KO:K13896]
LY180_11480  [KO:K02196]
LY180_11485  [KO:K02195]
LY180_11490  [KO:K02194]
LY180_11495  [KO:K02193] [EC:7.6.2.5]
LY180_11545  [KO:K06159]
LY180_11950  glnQ; glutamine ABC transporter ATP-binding protein [KO:K10017] [EC:7.4.2.1]
LY180_11955  [KO:K10015]
LY180_11960  [KO:K10016]
LY180_11965  [KO:K10014]
LY180_11970  [KO:K10013]
LY180_12460  [KO:K02045] [EC:7.3.2.3]
LY180_12465  cysW; sulfate/thiosulfate transporter permease subunit [KO:K02047]
LY180_12470  [KO:K02046]
LY180_12475  [KO:K02048]
LY180_13060  [KO:K23546]
LY180_13065  [KO:K23547]
LY180_13070  [KO:K23545]
LY180_13560  [KO:K02000] [EC:7.6.2.9]
LY180_13565  [KO:K02001]
LY180_13570  proX; glycine/betaine ABC transporter substrate-binding protein [KO:K02002]
LY180_15080  [KO:K16785]
LY180_15085  [KO:K16786] [EC:7.-.-.-]
LY180_15090  [KO:K16787] [EC:7.-.-.-]
LY180_15425  [KO:K11720]
LY180_15430  [KO:K07091]
LY180_16480  [KO:K07122]
LY180_16485  [KO:K07323]
LY180_16490  [KO:K02067]
LY180_16495  [KO:K02066]
LY180_16500  [KO:K02065]
LY180_16530  [KO:K06861] [EC:7.5.2.5]
LY180_16835  [KO:K09969]
LY180_16840  [KO:K09970]
LY180_16845  [KO:K09971]
LY180_16850  [KO:K09972] [EC:7.4.2.1]
LY180_17690  ugpC; glycerol-3-phosphate ABC transporter ATP-binding protein [KO:K05816] [EC:7.6.2.10]
LY180_17695  [KO:K05815]
LY180_17700  [KO:K05814]
LY180_17705  [KO:K05813]
LY180_17710  livF; amino acid ABC transporter ATP-binding protein [KO:K01996]
LY180_17715  livG; amino acid ABC transporter ATP-binding protein [KO:K01995]
LY180_17720  livM; leucine/isoleucine/valine transporter permease subunit [KO:K01998]
LY180_17725  [KO:K01997]
LY180_17730  [KO:K01999]
LY180_17750  [KO:K01999]
LY180_17760  ftsX; cell division protein FtsX [KO:K09811]
LY180_17765  tauB; taurine ABC transporter ATP-binding protein [KO:K09812]
LY180_17830  [KO:K15584]
LY180_17835  [KO:K15585]
LY180_17840  nikC; nickel ABC transporter permease [KO:K15586]
LY180_18165  [KO:K12370]
LY180_18170  [KO:K12369]
LY180_18180  [KO:K12368]
LY180_18335  xylF; xylose ABC transporter substrate-binding protein [KO:K10543]
LY180_18340  [KO:K10545] [EC:7.5.2.10]
LY180_18345  [KO:K10544]
LY180_18960  metQ; methionine ABC transporter substrate-binding protein [KO:K02073]
LY180_19290  [KO:K02036] [EC:7.3.2.1]
LY180_19295  pstA; phosphate transporter permease subunit PtsA [KO:K02038]
LY180_19300  pstC; phosphate transporter permease subunit PstC [KO:K02037]
LY180_19305  [KO:K02040]
LY180_19435  [KO:K06726] [EC:5.4.99.62]
LY180_19440  [KO:K10441] [EC:7.5.2.7]
LY180_19445  [KO:K10440]
LY180_20545  [KO:K23163]
LY180_21175  malG; maltose transporter permease [KO:K10110]
LY180_21180  malF; maltose transporter membrane protein [KO:K10109]
LY180_21185  malE; sugar ABC transporter substrate-binding protein [KO:K10108]
LY180_21195  [KO:K10111] [EC:7.5.2.-]
LY180_21465  rbsC; ribose ABC transporter permease [KO:K10550]
LY180_21470  [KO:K10551] [EC:7.5.2.8]
LY180_21475  [KO:K10549]
LY180_21560  [KO:K02044]
LY180_21565  glnQ; glutamine ABC transporter ATP-binding protein [KO:K02041] [EC:7.3.2.2]
LY180_22205  [KO:K23508]
LY180_22210  [KO:K10820] [EC:7.5.2.9]
LY180_22215  [KO:K23509]
LY180_22220  [KO:K23509]
LY180_22370  [KO:K07091]
LY180_22375  [KO:K11720]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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