KEGG   PATHWAY: enz03030
Entry
enz03030                    Pathway                                
Name
DNA replication - Enterobacter sp. T2
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
enz03030  DNA replication
enz03030

Organism
Enterobacter sp. T2 [GN:enz]
Gene
G0034_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
G0034_00435  ligB; NAD-dependent DNA ligase LigB [KO:K01972] [EC:6.5.1.2]
G0034_01430  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
G0034_01465  ssb1; single-stranded DNA-binding protein SSB1 [KO:K03111]
G0034_03090  [KO:K02344] [EC:2.7.7.7]
G0034_04170  rnhB; ribonuclease HII [KO:K03470] [EC:3.1.26.4]
G0034_04175  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
G0034_04330  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
G0034_04335  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
G0034_05155  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
G0034_06105  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
G0034_08425  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
G0034_13520  [KO:K02345] [EC:2.7.7.7]
G0034_14515  [KO:K02345] [EC:2.7.7.7]
G0034_14535  [KO:K02314] [EC:5.6.2.3]
G0034_16655  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
G0034_19665  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
G0034_20405  holC; DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
G0034_22915  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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