KEGG   PATHWAY: gga03030
Entry
gga03030                    Pathway                                
Name
DNA replication - Gallus gallus (chicken)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
gga03030  DNA replication
gga03030

Organism
Gallus gallus (chicken) [GN:gga]
Gene
100859719  RFC5; replication factor C subunit 5 isoform X2 [KO:K10756]
100859759  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
107050018  [KO:K10743] [EC:3.1.26.4]
107055326  POLE4; DNA polymerase epsilon subunit 4 isoform X3 [KO:K03506] [EC:2.7.7.7]
107057377  [KO:K02328]
373984  PCNA; proliferating cell nuclear antigen [KO:K04802]
395848  RNASEH1; ribonuclease H1 precursor [KO:K03469] [EC:3.1.26.4]
396542  RFC2; replication factor C subunit 2 [KO:K10755]
416027  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
416997  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
417275  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
417563  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
418058  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
418122  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
418593  POLA1; DNA polymerase alpha catalytic subunit isoform X2 [KO:K02320] [EC:2.7.7.7]
418874  RNASEH2B; ribonuclease H2 subunit B [KO:K10744]
418907  RFC3; replication factor C subunit 3 [KO:K10756]
419053  POLD3; DNA polymerase delta subunit 3 [KO:K03504]
419566  RPA4; replication protein A 32 kDa subunit [KO:K10739]
420578  RPA3; replication protein A 14 kDa subunit [KO:K10740]
421878  PRIM2; DNA primase large subunit [KO:K02685]
422043  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
422788  RFC1; replication factor C subunit 1 [KO:K10754]
423567  POLE2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
423688  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
424295  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
424958  RFC4; replication factor C subunit 4 [KO:K10755]
426646  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
426764  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
430516  LIG1; DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
769677  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

DBGET integrated database retrieval system