KEGG   PATHWAY: hhip03050
Entry
hhip03050                   Pathway                                
Name
Proteasome - Hippoglossus hippoglossus (Atlantic halibut)
Description
The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
hhip03050  Proteasome
hhip03050

Other DBs
GO: 0000502
Organism
Hippoglossus hippoglossus (Atlantic halibut) [GN:hhip]
Gene
117752442  psmc5; 26S proteasome regulatory subunit 8 isoform X1 [KO:K03066]
117752553  [KO:K06699]
117752849  psme3; proteasome activator complex subunit 3 [KO:K06698]
117753008  psmd11b; 26S proteasome non-ATPase regulatory subunit 11B [KO:K03036]
117753672  psme2; proteasome activator complex subunit 2 isoform X1 [KO:K06697]
117754063  psme1; proteasome activator complex subunit 1 isoform X1 [KO:K06696]
117754104  pomp; proteasome maturation protein [KO:K11599]
117755645  psma6a; proteasome subunit alpha type-6a [KO:K02730] [EC:3.4.25.1]
117755662  [KO:K02728] [EC:3.4.25.1]
117755746  [KO:K02727] [EC:3.4.25.1]
117756943  psmc3; 26S proteasome regulatory subunit 6A [KO:K03065]
117757113  psmc2; 26S proteasome regulatory subunit 7 [KO:K03061]
117758295  psmc1b; proteasome 26S subunit, ATPase 1b [KO:K03062]
117758537  [KO:K02730] [EC:3.4.25.1]
117758638  psmc6; 26S proteasome regulatory subunit 10B [KO:K03064]
117759163  psmd13; 26S proteasome non-ATPase regulatory subunit 13 [KO:K03039]
117759184  psmb1; proteasome subunit beta type-1 [KO:K02732] [EC:3.4.25.1]
117759267  psmd14; 26S proteasome non-ATPase regulatory subunit 14 [KO:K03030]
117760123  psmd1; 26S proteasome non-ATPase regulatory subunit 1 isoform X1 [KO:K03032]
117760529  [KO:K11598] [EC:3.4.25.1]
117760606  psmd12; 26S proteasome non-ATPase regulatory subunit 12 [KO:K03035]
117761494  psma5; proteasome subunit alpha type-5 [KO:K02729] [EC:3.4.25.1]
117762224  psmf1; proteasome inhibitor PI31 subunit [KO:K06700]
117762233  psmd6; 26S proteasome non-ATPase regulatory subunit 6 [KO:K03037]
117763459  psmd7; 26S proteasome non-ATPase regulatory subunit 7 [KO:K03038]
117763685  psma1; proteasome subunit alpha type-1 [KO:K02725] [EC:3.4.25.1]
117763686  psma4; proteasome subunit alpha type-4 [KO:K02728] [EC:3.4.25.1]
117764224  [KO:K06691]
117764250  [KO:K06691]
117766132  psmd3; 26S proteasome non-ATPase regulatory subunit 3 [KO:K03033]
117766543  [KO:K03036]
117768243  psmb3; proteasome subunit beta type-3 [KO:K02735] [EC:3.4.25.1]
117768299  psmd9; 26S proteasome non-ATPase regulatory subunit 9 [KO:K06693]
117770364  psmb2; proteasome subunit beta type-2 isoform X1 [KO:K02734] [EC:3.4.25.1]
117770597  [KO:K03029]
117770813  psmb4; proteasome subunit beta type-4 [KO:K02736] [EC:3.4.25.1]
117770991  psmb8a; proteasome subunit beta type-8 [KO:K02740] [EC:3.4.25.1]
117770992  psmb13a; proteasome 20S subunit beta 13a [KO:K02739] [EC:3.4.25.1]
117771000  psmb12; proteasome 20S subunit beta 12 [KO:K02738] [EC:3.4.25.1]
117771001  psmb9a; proteasome subunit beta type-9 [KO:K02741] [EC:3.4.25.1]
117771435  psmb10; proteasome subunit beta type-10 [KO:K02739] [EC:3.4.25.1]
117771936  psmb7; proteasome subunit beta type-7 [KO:K02739] [EC:3.4.25.1]
117772631  [KO:K02730] [EC:3.4.25.1]
117772709  psmd2; 26S proteasome non-ATPase regulatory subunit 2 [KO:K03028]
117772858  psmd8; 26S proteasome non-ATPase regulatory subunit 8 [KO:K03031]
117775333  psme4a; proteasome activator complex subunit 4A isoform X1 [KO:K06699]
117776747  [KO:K03029]
117777311  psmc4; 26S proteasome regulatory subunit 6B [KO:K03063]
117777549  psma2; proteasome subunit alpha type-2 [KO:K02726] [EC:3.4.25.1]
117778329  psmb11a; proteasome subunit beta type-11a [KO:K11598] [EC:3.4.25.1]
117778787  psma8; proteasome subunit alpha-type 8 [KO:K02731] [EC:3.4.25.1]
117778940  psmb5; proteasome subunit beta type-5 [KO:K02737] [EC:3.4.25.1]
117779238  psmb6; proteasome subunit beta type-6 [KO:K02738] [EC:3.4.25.1]
Reference
  Authors
Hirano Y, Murata S, Tanaka K
  Title
Large- and small-scale purification of mammalian 26S proteasomes.
  Journal
Methods Enzymol 399:227-40 (2005)
DOI:10.1016/S0076-6879(05)99015-0
Reference
  Authors
Saeki Y, Tanaka K
  Title
Cell biology: two hands for degradation.
  Journal
Nature 453:460-1 (2008)
DOI:10.1038/453460a
Reference
  Authors
Smith DM, Benaroudj N, Goldberg A
  Title
Proteasomes and their associated ATPases: a destructive combination.
  Journal
J Struct Biol 156:72-83 (2006)
DOI:10.1016/j.jsb.2006.04.012
Reference
  Authors
Strehl B, Seifert U, Kruger E, Heink S, Kuckelkorn U, Kloetzel PM
  Title
Interferon-gamma, the functional plasticity of the ubiquitin-proteasome system, and MHC class I antigen processing.
  Journal
Immunol Rev 207:19-30 (2005)
DOI:10.1111/j.0105-2896.2005.00308.x
Reference
  Authors
Darwin KH
  Title
Prokaryotic ubiquitin-like protein (Pup), proteasomes and pathogenesis.
  Journal
Nat Rev Microbiol 7:485-91 (2009)
DOI:10.1038/nrmicro2148
Reference
  Authors
Tomko RJ Jr, Hochstrasser M
  Title
Molecular architecture and assembly of the eukaryotic proteasome.
  Journal
Annu Rev Biochem 82:415-45 (2013)
DOI:10.1146/annurev-biochem-060410-150257
Reference
  Authors
Budenholzer L, Cheng CL, Li Y, Hochstrasser M
  Title
Proteasome Structure and Assembly.
  Journal
J Mol Biol 429:3500-3524 (2017)
DOI:10.1016/j.jmb.2017.05.027
Reference
  Authors
Cloos J, Roeten MS, Franke NE, van Meerloo J, Zweegman S, Kaspers GJ, Jansen G
  Title
(Immuno)proteasomes as therapeutic target in acute leukemia.
  Journal
Cancer Metastasis Rev 36:599-615 (2017)
DOI:10.1007/s10555-017-9699-4
Reference
  Authors
Sakata E, Bohn S, Mihalache O, Kiss P, Beck F, Nagy I, Nickell S, Tanaka K, Saeki Y, Forster F, Baumeister W
  Title
Localization of the proteasomal ubiquitin receptors Rpn10 and Rpn13 by electron cryomicroscopy.
  Journal
Proc Natl Acad Sci U S A 109:1479-84 (2012)
DOI:10.1073/pnas.1119394109
Related
pathway
hhip04120  Ubiquitin mediated proteolysis
KO pathway
ko03050   

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