KEGG   PATHWAY: hhip04120
Entry
hhip04120                   Pathway                                
Name
Ubiquitin mediated proteolysis - Hippoglossus hippoglossus (Atlantic halibut)
Description
Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
hhip04120  Ubiquitin mediated proteolysis
hhip04120

Other DBs
GO: 0016567
Organism
Hippoglossus hippoglossus (Atlantic halibut) [GN:hhip]
Gene
117752369  [KO:K10605] [EC:2.3.2.27]
117752599  stub1; E3 ubiquitin-protein ligase CHIP [KO:K09561] [EC:2.3.2.27]
117752762  [KO:K03873]
117752910  anapc16; anaphase-promoting complex subunit 16 [KO:K25229]
117752937  ube2ib; SUMO-conjugating enzyme UBC9-A [KO:K10577]
117753256  ube2d1b; ubiquitin-conjugating enzyme E2 D1b [KO:K06689] [EC:2.3.2.23]
117753308  [KO:K04696]
117753552  [KO:K03347]
117753676  flj11011l; probable ubiquitin-conjugating enzyme E2 W-B isoform X1 [KO:K10688] [EC:2.3.2.23 2.3.2.25]
117753677  eloca; elongin C paralog a [KO:K03872]
117753785  nedd4a; E3 ubiquitin-protein ligase NEDD4a isoform X1 [KO:K10591] [EC:2.3.2.26]
117753993  cul2; cullin-2 [KO:K03870]
117754013  ube3c; ubiquitin-protein ligase E3C [KO:K10589] [EC:2.3.2.26]
117754283  [KO:K05633] [EC:2.3.2.26]
117754467  traf6; TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
117754484  ube2g2; ubiquitin-conjugating enzyme E2 G2 [KO:K04555] [EC:2.3.2.23]
117754635  ube2al; ubiquitin conjugating enzyme E2 A, like isoform X1 [KO:K10573] [EC:2.3.2.23]
117754787  ube2f; NEDD8-conjugating enzyme UBE2F [KO:K10687] [EC:2.3.2.34]
117754796  cdc16; cell division cycle protein 16 homolog [KO:K03353]
117754888  mid1; E3 ubiquitin-protein ligase Midline-1 isoform X1 [KO:K08285] [EC:2.3.2.27]
117754981  si:rp71-68n21.9; kelch-like protein 9 [KO:K10447]
117755725  keap1a; kelch-like ECH-associated protein 1A [KO:K10456]
117756070  [KO:K04706] [EC:2.3.2.-]
117756336  [KO:K06689] [EC:2.3.2.23]
117757032  mdm2; E3 ubiquitin-protein ligase Mdm2 [KO:K06643] [EC:2.3.2.27]
117757196  ube2q1; ubiquitin-conjugating enzyme E2 Q1 isoform X1 [KO:K10582] [EC:2.3.2.23]
117757240  ube2h; ubiquitin-conjugating enzyme E2 H [KO:K10576] [EC:2.3.2.23]
117757558  ube2nb; ubiquitin-conjugating enzyme E2Nb [KO:K10580] [EC:2.3.2.23]
117758196  ube2j1; ubiquitin-conjugating enzyme E2 J1 [KO:K10578] [EC:2.3.2.23]
117758434  ddb1; DNA damage-binding protein 1 [KO:K10610]
117758785  cul4a; cullin-4A isoform X1 [KO:K10609]
117759343  [KO:K06689] [EC:2.3.2.23]
117759679  pias4a; E3 SUMO-protein ligase PIAS4-A [KO:K16065] [EC:2.3.2.27]
117759694  anapc11; anaphase-promoting complex subunit 11 [KO:K03358]
117759717  [KO:K04678] [EC:2.3.2.26]
117759749  herc2; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HERC2 [KO:K10595] [EC:2.3.2.26]
117759863  uba52; ubiquitin-60S ribosomal protein L40 [KO:K02927]
117759869  anapc4; anaphase-promoting complex subunit 4 [KO:K03351]
117760007  uba6; ubiquitin-like modifier-activating enzyme 6 [KO:K10699] [EC:6.2.1.45]
117760042  [KO:K02207] [EC:2.3.2.23]
117760352  ube3a; ubiquitin-protein ligase E3A [KO:K10587] [EC:2.3.2.26]
117760516  [KO:K03364]
117761247  uba7; ubiquitin-like modifier-activating enzyme 1 [KO:K03178] [EC:6.2.1.45]
117761467  uba3; NEDD8-activating enzyme E1 catalytic subunit isoform X1 [KO:K10686] [EC:6.2.1.64]
117761475  [KO:K05632] [EC:2.3.2.26]
117761565  ube2j2; ubiquitin-conjugating enzyme E2 J2 [KO:K04554] [EC:2.3.2.23]
117761649  ube2kb; ubiquitin-conjugating enzyme E2Kb (UBC1 homolog, yeast) isoform X1 [KO:K04649] [EC:2.3.2.23]
117761889  fbxo2; F-box only protein 2 [KO:K10099]
117762161  ube2c; ubiquitin-conjugating enzyme E2 C [KO:K06688] [EC:2.3.2.23]
117762167  ube2o; (E3-independent) E2 ubiquitin-conjugating enzyme UBE2O isoform X1 [KO:K10581] [EC:2.3.2.24]
117762238  ube2r2; ubiquitin-conjugating enzyme E2 R2 [KO:K02207] [EC:2.3.2.23]
117762308  vhl; von Hippel-Lindau disease tumor suppressor [KO:K03871]
117762580  [KO:K10582] [EC:2.3.2.23]
117762915  siah1; E3 ubiquitin-protein ligase Siah1 [KO:K04506] [EC:2.3.2.27]
117762929  pias1b; E3 SUMO-protein ligase PIAS1 isoform X1 [KO:K04706] [EC:2.3.2.-]
117763115  [KO:K10576] [EC:2.3.2.23]
117763150  [KO:K10615] [EC:2.3.2.26]
117763224  [KO:K10614] [EC:2.3.2.26]
117763225  [KO:K10614] [EC:2.3.2.26]
117763353  ube2na; ubiquitin-conjugating enzyme E2Na [KO:K10580] [EC:2.3.2.23]
117763418  uba2; SUMO-activating enzyme subunit 2 [KO:K10685] [EC:6.2.1.45]
117763457  ddb2; DNA damage-binding protein 2 isoform X1 [KO:K10140]
117763771  anapc13; anaphase-promoting complex subunit 13 [KO:K12456]
117763824  wwp2; NEDD4-like E3 ubiquitin-protein ligase WWP2 isoform X1 [KO:K05630] [EC:2.3.2.26]
117763876  det1; DET1 homolog [KO:K10571]
117763999  [KO:K03178] [EC:6.2.1.45]
117764000  [KO:K03178] [EC:6.2.1.45]
117764275  birc7; baculoviral IAP repeat-containing protein 7 [KO:K16061]
117764574  ube4b; ubiquitin conjugation factor E4 B isoform X1 [KO:K10597] [EC:2.3.2.27]
117764732  huwe1; E3 ubiquitin-protein ligase HUWE1 isoform X1 [KO:K10592] [EC:2.3.2.26]
117764866  [KO:K10686] [EC:6.2.1.64]
117764958  [KO:K04694]
117765289  itchb; itchy E3 ubiquitin protein ligase b isoform X1 [KO:K05632] [EC:2.3.2.26]
117765770  socs3a; suppressor of cytokine signaling 3a [KO:K04696]
117765896  socs1a; suppressor of cytokine signaling 1a [KO:K04694]
117765976  anapc2; anaphase-promoting complex subunit 2 [KO:K03349]
117765997  [KO:K09561] [EC:2.3.2.27]
117766105  [KO:K10577]
117766128  cdc27; cell division cycle protein 27 homolog isoform X1 [KO:K03350]
117766139  ube2m; NEDD8-conjugating enzyme Ubc12 [KO:K10579] [EC:2.3.2.34]
117766232  smurf2; E3 ubiquitin-protein ligase SMURF2 isoform X1 [KO:K04678] [EC:2.3.2.26]
117766234  smurf1; E3 ubiquitin-protein ligase SMURF1 isoform X1 [KO:K04678] [EC:2.3.2.26]
117766292  rbx1; E3 ubiquitin-protein ligase RBX1 [KO:K03868] [EC:2.3.2.32]
117766442  mgrn1b; E3 ubiquitin-protein ligase MGRN1b isoform X1 [KO:K10604] [EC:2.3.2.27]
117766849  elob; elongin-B [KO:K03873]
117766871  keap1b; kelch-like ECH-associated protein 1B [KO:K10456]
117766900  ube2z; ubiquitin-conjugating enzyme E2 Z [KO:K10585] [EC:2.3.2.23]
117767345  fbxw8; F-box/WD repeat-containing protein 8 [KO:K10264]
117767427  rhobtb4; rho related BTB domain containing 4 isoform X1 [KO:K07868]
117767501  c9h5orf51; UPF0600 protein C5orf51 homolog isoform X1 [KO:K10291]
117767502  herc3; probable E3 ubiquitin-protein ligase HERC3 [KO:K10614] [EC:2.3.2.26]
117767844  pias2; E3 SUMO-protein ligase PIAS2 [KO:K16063] [EC:2.3.2.-]
117767902  ube2l3b; ubiquitin-conjugating enzyme E2 L3b [KO:K04552] [EC:2.3.2.23]
117767981  ercc8; DNA excision repair protein ERCC-8 [KO:K10570]
117767988  ppil2; RING-type E3 ubiquitin-protein ligase PPIL2 isoform X1 [KO:K10598] [EC:5.2.1.8]
117768078  ube3b; ubiquitin-protein ligase E3B [KO:K10588] [EC:2.3.2.26]
117768136  [KO:K07868]
117768196  anapc7; anaphase-promoting complex subunit 7 [KO:K03354]
117768200  [KO:K10575] [EC:2.3.2.23]
117768224  anapc5; anaphase-promoting complex subunit 5 [KO:K03352]
117768331  ube2d4; ubiquitin-conjugating enzyme E2 D4 [KO:K06689] [EC:2.3.2.23]
117768334  ubox5; RING finger protein 37 isoform X1 [KO:K10600] [EC:2.3.2.27]
117768408  rchy1; RING finger and CHY zinc finger domain-containing protein 1 [KO:K10144] [EC:2.3.2.27]
117769018  fbxw11a; F-box/WD repeat-containing protein 11a isoform X1 [KO:K03362]
117769083  xiap; E3 ubiquitin-protein ligase XIAP [KO:K04725] [EC:2.3.2.27]
117769095  syvn1; E3 ubiquitin-protein ligase synoviolin [KO:K10601] [EC:2.3.2.27]
117769177  ube2a; ubiquitin-conjugating enzyme E2 A [KO:K10573] [EC:2.3.2.23]
117769194  [KO:K06689] [EC:2.3.2.23]
117769325  ube2d2; ubiquitin-conjugating enzyme E2 D2 [KO:K06689] [EC:2.3.2.23]
117769500  ube2ka; ubiquitin-conjugating enzyme E2Ka (UBC1 homolog, yeast) [KO:K04649] [EC:2.3.2.23]
117769502  cul4b; cullin-4B isoform X1 [KO:K10609]
117769841  [KO:K10260]
117769851  prpf19; pre-mRNA-processing factor 19 [KO:K10599] [EC:2.3.2.27]
117770530  ube2ql1; ubiquitin-conjugating enzyme E2Q-like protein 1 [KO:K10582] [EC:2.3.2.23]
117770618  [KO:K20217] [EC:2.3.2.23]
117771087  ube2e1; ubiquitin-conjugating enzyme E2 E1 isoform X1 [KO:K20217] [EC:2.3.2.23]
117771392  cdc26; anaphase-promoting complex subunit CDC26 [KO:K03359]
117771425  skp2; S-phase kinase-associated protein 2 isoform X1 [KO:K03875]
117771523  [KO:K10594] [EC:2.3.2.26]
117771560  trim32; E3 ubiquitin-protein ligase TRIM32 [KO:K10607] [EC:2.3.2.27]
117771648  [KO:K10575] [EC:2.3.2.23]
117771673  nedd4l; E3 ubiquitin-protein ligase NEDD4-like isoform X1 [KO:K13305] [EC:2.3.2.26]
117771810  ube2l3a; ubiquitin-conjugating enzyme E2 L3a [KO:K04552] [EC:2.3.2.23]
117772426  [KO:K10587] [EC:2.3.2.26]
117772748  anapc15; anaphase-promoting complex subunit 15 [KO:K25228]
117772937  cul3b; cullin-3b isoform X1 [KO:K03869]
117772949  ube4a; ubiquitin conjugation factor E4 A [KO:K10596] [EC:2.3.2.27]
117772967  cbl; E3 ubiquitin-protein ligase CBL isoform X1 [KO:K04707] [EC:2.3.2.27]
117773062  [KO:K10612]
117773188  rnf7; RING-box protein 2 [KO:K10611]
117773312  sae1; SUMO-activating enzyme subunit 1 [KO:K10684] [EC:6.2.1.45]
117773373  trip12; E3 ubiquitin-protein ligase TRIP12 isoform X1 [KO:K10590] [EC:2.3.2.26]
117773983  [KO:K04707] [EC:2.3.2.27]
117774023  ubb; polyubiquitin-B isoform X1 [KO:K08770]
117774110  ube2g1a; ubiquitin-conjugating enzyme E2 G1a [KO:K10575] [EC:2.3.2.23]
117774164  birc2; baculoviral IAP repeat-containing protein 2 [KO:K16060]
117774188  cul5b; cullin-5 isoform X1 [KO:K10612]
117774205  trim37; E3 ubiquitin-protein ligase TRIM37 isoform X1 [KO:K10608] [EC:2.3.2.27]
117774290  skp1; S-phase kinase-associated protein 1 [KO:K03094]
117774460  klhl13; kelch-like protein 13 isoform X1 [KO:K10447]
117774468  ube2b; ubiquitin-conjugating enzyme E2 B [KO:K10574] [EC:2.3.2.23]
117774511  cblb; E3 ubiquitin-protein ligase CBL-B-B [KO:K22517] [EC:2.3.2.27]
117774911  cdc23; cell division cycle protein 23 homolog [KO:K03355]
117775038  rps27a; ubiquitin-40S ribosomal protein S27a [KO:K02977]
117775107  herc4; probable E3 ubiquitin-protein ligase HERC4 isoform X1 [KO:K10615] [EC:2.3.2.26]
117775287  birc6; baculoviral IAP repeat-containing protein 6 isoform X1 [KO:K10586] [EC:2.3.2.23]
117775401  fancl; E3 ubiquitin-protein ligase FANCL isoform X1 [KO:K10606] [EC:2.3.2.27]
117775547  [KO:K06689] [EC:2.3.2.23]
117775686  prkn; E3 ubiquitin-protein ligase parkin isoform X1 [KO:K04556] [EC:2.3.2.31]
117776032  anapc1; anaphase-promoting complex subunit 1 [KO:K03348]
117776176  ube2s; ubiquitin-conjugating enzyme E2 S [KO:K10583] [EC:2.3.2.23]
117776229  [KO:K20217] [EC:2.3.2.23]
117776230  [KO:K20217] [EC:2.3.2.23]
117776308  ubr5; E3 ubiquitin-protein ligase UBR5 isoform X1 [KO:K10593] [EC:2.3.2.26]
117776325  cblc; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase CBL-C [KO:K22518] [EC:2.3.2.27]
117776354  [KO:K10602] [EC:2.3.2.27]
117777648  [KO:K08285] [EC:2.3.2.27]
117777680  [KO:K03364]
117777943  [KO:K03869]
117778009  cdc34b; cell division cycle 34 homolog (S. cerevisiae) b [KO:K02207] [EC:2.3.2.23]
117778049  fzr1b; fizzy-related protein homolog [KO:K03364]
117778077  cop1; E3 ubiquitin-protein ligase COP1 [KO:K10143] [EC:2.3.2.27]
117778476  aire; autoimmune regulator [KO:K10603]
117778509  [KO:K03869]
117778701  cdc20; cell division cycle protein 20 homolog [KO:K03363]
117778937  herc1; probable E3 ubiquitin-protein ligase HERC1 isoform X1 [KO:K10594] [EC:2.3.2.26]
117779239  anapc10; anaphase-promoting complex subunit 10 isoform X1 [KO:K03357]
Reference
  Authors
Kamura T.
  Title
[Cullin-based E3 family]
  Journal
Tanpakushitsu Kakusan Koso 51:1167-72 (2006)
Reference
  Authors
Matsuda N.
  Title
[Overview: hereditary disorders caused by dysfunction of ubiquitylation]
  Journal
Tanpakushitsu Kakusan Koso 51:1402-7 (2006)
Reference
  Authors
Tokunaga F.
  Title
[E2 ubiquitin-conjugating enzymes: structures and functions]
  Journal
Tanpakushitsu Kakusan Koso 51:1150-6 (2006)
Reference
  Authors
Nalepa G, Rolfe M, Harper JW.
  Title
Drug discovery in the ubiquitin-proteasome system.
  Journal
Nat Rev Drug Discov 5:596-613 (2006)
DOI:10.1038/nrd2056
Reference
  Authors
Hsu YJ, Goodman SR.
  Title
Spectrin and ubiquitination: a review.
  Journal
Cell Mol Biol (Noisy-le-grand) Suppl 51:OL801-7 (2005)
Reference
  Authors
Hatakeyama S, Nakayama KI.
  Title
Ubiquitylation as a quality control system for intracellular proteins.
  Journal
J Biochem 134:1-8 (2003)
DOI:10.1093/jb/mvg106
Reference
  Authors
Lee J, Zhou P.
  Title
DCAFs, the missing link of the CUL4-DDB1 ubiquitin ligase.
  Journal
Mol Cell 26:775-80 (2007)
DOI:10.1016/j.molcel.2007.06.001
Related
pathway
hhip03050  Proteasome
KO pathway
ko04120   

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