Homo sapiens (human): 23339 Help Entry 23339             CDS       T01001                                  Symbol VPS39, TLP, VAM6, hVam6p Name (RefSeq) VPS39 subunit of HOPS complex   KO K20183   Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39 Organism hsa  Homo sapiens (human) Pathway hsa04140   Autophagy - animal hsa04148   Efferocytosis hsa05132   Salmonella infection Network nt06181  Salmonella nt06532  Autophagy   Element N01300   Tethering of late endosomes and lysosomes N01301   Salmonella SifA to Tethering of late endosomes and lysosomes N01721   Autophagosome and lysosome fusion, tethering factor Brite KEGG Orthology (KO) [BR:hsa00001]  09140 Cellular Processes   09141 Transport and catabolism    04140 Autophagy - animal     23339 (VPS39)    04148 Efferocytosis     23339 (VPS39)  09160 Human Diseases   09171 Infectious disease: bacterial    05132 Salmonella infection     23339 (VPS39)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:hsa04131]     23339 (VPS39) Membrane trafficking [BR:hsa04131]  Endosome - Lysosome transport   Tethering complex    Hops complex     23339 (VPS39) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Vps39_2 Vps39_1 CNH Clathrin KCTD11_21_C DUF4145 Motif Other DBs NCBI-GeneID:  23339 NCBI-ProteinID:  NP_001288067 OMIM:  612188 HGNC:  20593 Ensembl:  ENSG00000166887 UniProt:  Q96JC1 Structure PDBPDBj LinkDB All DBs Position 15:complement(42158701..42208304) Genome browser AA seq 886 aa AA seqDB search MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVVPADVASPESGSCN RFEVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLF TCDLQHTETGEEVLRMCVAVKKKLQLYFWKDREFHELQGDFSVPDVPKSMAWCENSICVG FKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKCA LNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGSNIIYVASN HFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQK RFDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYL TQKRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLL RLENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTV QYLQHLGTENLHLIFSYSVWVLRDFPEDGLKIFTEDLPEVESLPRDRVLGFLIENFKGLA IPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSFPAGKTPVPAGEEEGELGEY RQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAE EYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHS KLDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQ QVKCIITEEKVCMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT NT seq 2661 nt NT seq  +upstreamnt  +downstreamnt atgcacgacgctttcgagccagtgccgatcctagaaaagctgcctctgcaaatcgactgt ctggctgcctgggaggaatggcttcttgtgggaaccaaacaaggacatcttcttctctat aggattcggaaggacgttgtgccagcagatgtagcatcacctgaaagcggcagttgcaac agatttgaagtgacactagagaaatccaataagaacttctccaaaaagattcagcagatc catgtggtttcccagtttaagattctggtcagcttgttagaaaataacatttatgtccat gacctattgacatttcaacaaatcactacggtttcaaaggcaaagggagcatcactgttt acttgtgacctccagcacacagagaccggtgaggaggtgttacggatgtgtgtggcagta aaaaagaagctgcagctctatttctggaaggacagggaatttcatgaattgcagggggac tttagtgtgccagatgtgcccaagtccatggcgtggtgtgaaaattctatctgtgtgggt ttcaagagagactactacctaataagggtggatggaaaggggtccatcaaagagctcttt ccaacaggaaaacagctggagcccttagttgcacctctggcagatggaaaagtggctgtg ggccaggatgatctcaccgtggtactcaatgaggaagggatctgcacacagaaatgtgcc ctgaactggacggacataccagtggccatggagcaccagcctccctacatcattgcagtg ttgcctcgatatgttgagatccgaacatttgaaccgaggcttctggtccaaagcattgaa ttgcaaaggccccgtttcattacctcaggaggatcaaacattatctatgtggccagcaat cattttgtttggagactcatccctgtccccatggcaacccaaatccaacaacttctccag gacaagcagtttgaattggctctgcagctcgcagaaatgaaagatgattctgacagtgaa aagcagcaacaaattcatcacatcaagaacttgtatgccttcaacctcttctgccagaag cgttttgatgagtccatgcaggtctttgctaaacttggcacagatcccacccatgtgatg ggcctgtaccctgacctgctgcccacagactacagaaagcagttgcagtatcccaaccca ttgcctgtgctctccggggctgaattggagaaggctcacttagctctgattgactacctg acacagaaacgaagtcaattggtaaagaagctgaatgactctgatcaccagtcaagcacc tcaccgctcatggaaggcactcccaccatcaaatccaagaagaagctgctacaaatcatc gacaccaccctgctcaagtgctatctccatacaaatgtggccctggtggcccccttgcta cgcctggagaacaatcactgccacatcgaggagagcgagcacgtgctaaagaaggctcac aagtacagtgagcttatcatcctgtatgagaagaaggggctccacgagaaagctctgcag gtgctcgtggaccagtccaagaaagccaactcccctctgaaaggccacgagaggacagtg cagtatctgcagcatctgggcacagaaaacctgcatttgattttctcctactcagtgtgg gtgctgagagacttcccagaagatggcctgaagatatttactgaagatctcccggaagtg gagtctctgccacgtgatcgagtcctcggcttcttaatagagaattttaagggtctggct attccttatctggaacacatcatccatgtttgggaggagacaggctctcggttccacaac tgcctgatccagctatactgtgagaaggtgcaaggtctgatgaaggagtatctcctgtcc ttccctgcaggcaaaaccccagtcccagctggagaggaagagggtgagctgggagaatac cggcaaaagctcctcatgttcttggagatttccagctactatgatccaggccggctcatc tgtgattttccctttgatggcctcttagaagaacgagctctcctgttggggcgcatgggg aaacatgaacaagctcttttcatttatgtccacatcttgaaggatacaaggatggctgag gagtactgccacaaacactatgaccgaaacaaagatggcaacaaagatgtgtatctgtcc ctgcttcggatgtacctgtcgccccccagcattcactgcctggggccaatcaagctggaa ctactggagccaaaagccaacctccaggccgctctgcaggtcctcgagctacaccacagc aaactggacaccaccaaggccctcaaccttctgccagcaaacactcagatcaatgacata cgcatcttcctggaaaaggtcttggaagaaaatgcacaaaagaaacggttcaatcaagtg ctcaagaaccttctccatgcagaattcctgagggtccaggaagagcggattttacaccag caggtgaagtgcatcatcacagaggagaaggtgtgcatggtgtgtaagaagaagattggg aacagtgcatttgcaagataccccaatggagtggtcgtccattacttctgttccaaagag gtaaacccagctgacacttga

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