Homo sapiens (human): 9785 Help Entry 9785              CDS       T01001                                  Symbol DHX38, DDX38, PRP16, PRPF16, RP84 Name (RefSeq) DEAH-box helicase 38   KO K12815   pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:5.6.2.6] Organism hsa  Homo sapiens (human) Pathway hsa03040   Spliceosome Network nt06547  Spliceosome   Element N01972   Spliceosome catalysis (branching) N01993   Spliceosome catalysis (exon ligation) Disease H00527   Retinitis pigmentosa Brite KEGG Orthology (KO) [BR:hsa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     9785 (DHX38)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:hsa03041]     9785 (DHX38) Enzymes [BR:hsa01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      9785 (DHX38) Spliceosome [BR:hsa03041]  Complex C   Other components    Step II factors     9785 (DHX38) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  OB_NTP_bind Helicase_C HA2_C DEAD WHD_HA2 AAA_22 AAA_19 T2SSE nSTAND3 nSTAND_NTPase5 PhoH Flavi_DEAD AAA_30 Sigma54_activ_2 AAA_16 AAA_7 Motif Other DBs NCBI-GeneID:  9785 NCBI-ProteinID:  NP_054722 OMIM:  605584 HGNC:  17211 Ensembl:  ENSG00000140829 UniProt:  Q92620 Structure PDBPDBj LinkDB All DBs Position 16:72093847..72112912 Genome browser AA seq 1227 aa AA seqDB search MGDTSEDASIHRLEGTDLDCQVGGLICKSKSAASEQHVFKAPAPRPSLLGLDLLASLKRR EREEKDDGEDKKKSKVSSYKDWEESKDDQKDAEEEGGDQAGQNIRKDRHYRSARVETPSH PGGVSEEFWERSRQRERERREHGVYASSKEEKDWKKEKSRDRDYDRKRDRDERDRSRHSS RSERDGGSERSSRRNEPESPRHRPKDAATPSRSTWEEEDSGYGSSRRSQWESPSPTPSYR DSERSHRLSTRDRDRSVRGKYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREEG EEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQ KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDEDFEEDNAAKVHLMVHNLVPPFLDGR IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMG VKKEEEPDKAVTEDGKVDYRTEQKFADHMKRKSEASSEFAKKKSILEQRQYLPIFAVQQE LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE MGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN TDVLFGLLREVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFSKTPQ EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKN NNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW LAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVR STKIYTPGRKEQGEPMTPRRTPARFGL NT seq 3684 nt NT seq  +upstreamnt  +downstreamnt atgggggacaccagtgaggatgcctcgatccatcgattggaaggcactgatctggactgt caggttggtggtcttatttgcaagtccaaaagtgcggccagcgagcagcatgtcttcaag gctcctgctccccgcccttcattactcggactggacttgctggcttccctgaaacggaga gagcgagaggagaaggacgatggggaggacaagaagaagtccaaagtctcctcctacaag gactgggaagagagcaaggatgaccagaaggatgctgaggaagagggcggtgaccaggct ggccaaaatatccggaaagacagacattatcggtctgctcgggtagagactccatcccat ccgggtggtgtgagcgaagagttttgggaacgcagtcggcagagagagcgggagcggcgg gaacatggtgtctatgcctcgtccaaagaagaaaaggattggaagaaggagaaatcgcgg gatcgagactatgaccgcaagagggacagagatgagcgggatagaagtaggcacagcagc agatcagagcgagatggagggtcagagcgtagcagcagaagaaatgaacccgagagccca cgacatcgacctaaagatgcagccaccccttcaaggtctacctgggaggaagaggacagt ggctatggctcctcaaggcgctcacagtgggaatcgccctccccgacgccttcctatcgg gattctgagcggagccatcggctgtccactcgagatcgagacaggtctgtgaggggcaag tactcggatgacacgcctctgccaactccctcctacaaatataacgagtgggccgatgac agaagacacttggggtccaccccgcgtctgtccaggggccgaggaagacgtgaggagggc gaagaaggaatttcatttgacacggaggaggagcggcagcagtgggaagatgaccagagg caagccgatcgggattggtacatgatggacgagggctatgacgagttccacaacccgctg gcctactcctccgaggactacgtgaggaggcgggagcagcacctgcataaacagaagcag aagcgcatttcagctcagcggagacagatcaatgaggataacgagcgctgggagacaaac cgcatgctcaccagtggggtggtccatcggctggaggtggatgaggactttgaagaggac aacgcggccaaggtgcatctgatggtgcacaatctggtgcctccctttctggatgggcgc attgtcttcaccaagcagccggagccggtgattccagtgaaggatgctacttctgacctg gccatcattgctcggaaaggcagccagacagtgcggaagcacagggagcagaaggagcgc aagaaggctcagcacaaacactgggaactggcggggaccaaactgggagatataatgggc gtcaagaaggaggaagagccagataaagctgtgacggaggatgggaaggtggactacagg acagagcagaagtttgcagatcacatgaagagaaagagcgaagccagcagtgaatttgca aagaagaagtccatcctggagcagaggcagtacctgcccatctttgcagtgcagcaggag ctgctcactattatcagagacaacagcatcgtgatcgtggttggggagacggggagtggt aagaccactcagctgacgcagtacctgcatgaagatggttacacggactatgggatgatt gggtgtacccagccccggcgtgtagctgccatgtcagtggccaagagagtcagtgaagag atggggggaaaccttggcgaggaggtgggctatgccatccgctttgaagactgcacttca gagaacaccttgatcaaatacatgactgacgggatcctgctccgagagtccctccgggaa gccgacctggatcactacagtgccatcatcatggacgaggcccacgagcgctccctcaac actgacgtgctctttgggctgctccgggaggtagtggctcggcgctcagacctgaagctc atcgtcacatcagccacgatggatgcggagaagtttgctgccttttttgggaatgtcccc atcttccacatccctggccgtaccttccctgttgacatcctcttcagcaagaccccacag gaggattacgtggaggctgcagtgaagcagtccttgcaggtgcacctgtcgggggcccct ggagacatccttatcttcatgcctggccaagaggacattgaggtgacctcagaccagatt gtggagcatctggaggaactggagaacgcgcctgccctggctgtgctgcccatctactct cagctgccttctgacctccaggccaaaatcttccagaaggctccagatggcgttcggaag tgcatcgttgccaccaatattgccgagacgtctctcactgttgacggcatcatgtttgtt atcgattctggttattgcaaattaaaggtcttcaaccccaggattggcatggatgctctg cagatctatcccattagccaggccaatgccaaccagcggtcagggcgagccggcaggacg ggcccaggtcagtgtttcaggctctacacccagagcgcctacaagaatgagctcctgacc accacagtgcccgagatccagaggactaacctggccaacgtggtgctgctgctcaagtcc ctcggggtgcaggacctgctgcagttccacttcatggacccgcccccggaggacaacatg ctcaactctatgtatcagctctggatcctcggggccctggacaacacaggtggtctgacc tctaccgggcggctgatggtggagttcccgctggaccctgccctgtccaagatgctcatc gtgtcctgtgacatgggctgcagctccgagatcctgctcatcgtttccatgctctcggtc ccagccatcttctacaggcccaagggtcgagaggaggagagtgatcaaatccgggagaag ttcgctgttcctgagagcgatcatttgacctacctgaatgtttacctgcagtggaagaac aataattactccaccatctggtgtaacgatcatttcatccatgctaaggccatgcggaag gtccgggaggtgcgagctcaactcaaggacatcatggtgcagcagcggatgagcctggcc tcgtgtggcactgactgggacatcgtcaggaagtgcatctgtgctgcctatttccaccaa gcagccaagctcaagggaatcggggagtacgtgaacatccgcacagggatgccctgccac ttgcaccccaccagctccctttttggaatgggctacaccccagattacatagtgtatcac gagttggtcatgaccaccaaggagtatatgcagtgtgtgaccgctgtggacggggagtgg ctggcggagctgggccccatgttctatagcgtgaaacaggcgggcaagtcacggcaggag aaccgtcgtcgggccaaagaggaagcctctgccatggaggaggagatggcgctggccgag gagcagctgcgagcccggcggcaggagcaggagaagcgcagccccctgggcagtgtcagg tctacgaagatctacactccaggccggaaagagcaaggggagcccatgacccctcgccgc acgccagcccgctttggtctgtga

Homo sapiens (human): 55702 Help Entry 55702             CDS       T01001                                  Symbol YJU2, CCDC94 Name (RefSeq) YJU2 splicing factor homolog   KO K28527   splicing factor YJU2 Organism hsa  Homo sapiens (human) Pathway hsa03040   Spliceosome Network nt06547  Spliceosome   Element N01972   Spliceosome catalysis (branching) N01993   Spliceosome catalysis (exon ligation) Brite KEGG Orthology (KO) [BR:hsa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     55702 (YJU2)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:hsa03041]     55702 (YJU2) Spliceosome [BR:hsa03041]  Other splicing related proteins   Spliceosome associated proteins (SAPs)    Other SAPs     55702 (YJU2) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Saf4_Yju2 Motif Other DBs NCBI-GeneID:  55702 NCBI-ProteinID:  NP_060544 HGNC:  25518 Ensembl:  ENSG00000105248 UniProt:  Q9BW85 Structure PDBPDBj LinkDB All DBs Position 19:4247080..4269088 Genome browser AA seq 323 aa AA seqDB search MSERKVLNKYYPPDFDPSKIPKLKLPKDRQYVVRLMAPFNMRCKTCGEYIYKGKKFNARK ETVQNEVYLGLPIFRFYIKCTRCLAEITFKTDPENTDYTMEHGATRNFQAEKLLEEEEKR VQKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRLSE EERRRQQQEEDEQETAALLEEARKRRLLEDSDSEDEAAPSPLQPALRPNPTAILDEAPKP KRKVEVWEQSVGSLGSRPPLSRLVVVKKAKADPDCSNGQPQAAPTPGAPQNRKEANPTPL TPGASSLSQLGAYLDSDDSNGSN NT seq 972 nt NT seq  +upstreamnt  +downstreamnt atgtcggagcgaaaagtattaaacaaatactacccgccggactttgacccatcaaagatc cccaaactcaagctccccaaagaccggcagtacgtggtgcggctgatggcccccttcaac atgaggtgtaagacgtgcggagaatacatctacaaggggaagaaattcaatgctcggaag gagacggtgcagaacgaggtctacctgggcctgcccatcttccgcttttacatcaagtgc acgcgctgcctggcagagatcaccttcaagacagaccctgaaaacacagactacaccatg gagcatggagccacgcggaatttccaggctgagaagctcctggaggaggaggagaagagg gtgcagaaggagcgggaggacgaggagctgaacaaccccatgaaggtgctggagaaccgg accaaggactccaagctggagatggaggtgctggagaacctccaggagctgaaagacctg aaccagcggcaggcgcacgtggacttcgaggctatgctgaggcagcaccgcctgtcggag gaggagcggcggaggcagcagcaggaggaggacgagcaggagaccgcggccctgttggag gaagccagaaagcgaagactgctggaggactccgactcagaggatgaggctgctccctcg cccctgcagccagcccttcggcccaaccccaccgccatcctggatgaggccccaaagccc aagaggaaggtggaggtctgggagcagagcgttggcagcctgggcagccggcccccgctg tcgaggctggtcgtggtgaagaaggcaaaggccgacccggactgcagcaacgggcagcct caggcggcccccaccccaggagccccgcagaacaggaaggaggccaaccctacacccctg acgcctggcgcgtcctccctgagccaactgggtgcatacctggacagtgacgacagcaac ggcagcaactga

Homo sapiens (human): 54883 Help Entry 54883             CDS       T01001                                  Symbol CWC25, CCDC49 Name (RefSeq) CWC25 spliceosome associated protein   KO K28450   pre-mRNA-splicing factor CWC25 Organism hsa  Homo sapiens (human) Pathway hsa03040   Spliceosome Network nt06547  Spliceosome   Element N01972   Spliceosome catalysis (branching) N01993   Spliceosome catalysis (exon ligation) Brite KEGG Orthology (KO) [BR:hsa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     54883 (CWC25)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:hsa03041]     54883 (CWC25) Spliceosome [BR:hsa03041]  Other splicing related proteins   Spliceosome associated proteins (SAPs)    Other SAPs     54883 (CWC25) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  CWC25 Cir_N Motif Other DBs NCBI-GeneID:  54883 NCBI-ProteinID:  NP_060218 HGNC:  25989 Ensembl:  ENSG00000273559 UniProt:  Q9NXE8 Structure PDBPDBj LinkDB All DBs Position 17:complement(38800441..38825321) Genome browser AA seq 425 aa AA seqDB search MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDV GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA PSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKK EKKKKHKKHKHRSSSSDRSSSEDEHSAGRSQKKMANSSPVLSKVPGYGLQVRNSDRNQGL QGPLTAEQKRGHGMKNHSRSRSSSHSPPRHASKKSTREAGSRDRRSRSLGRRSRSPRPSK LHNSKVNRRETGQTRSPSPKKEVYQRRHAPGYTRKLSAEELERKRQEMMENAKWREEERL NILKRHAKDEEREQRLEKLDSRDGKFIHRMKLESASTSSLEDRVKRNIYSLQRTSVALEK NFMKR NT seq 1278 nt NT seq  +upstreamnt  +downstreamnt atggggggcggagacctgaatctgaagaagagctggcacccgcagaccctcaggaatgtg gagaaagtgtggaaggccgagcagaagcatgaggctgagcggaagaagattgaggagctt cagcgggagctgcgagaagagagagcccgggaagagatgcagcgctatgcggaggatgtt ggggccgtcaagaaaaaagaagaaaagttggactggatgtaccagggtcctggtgggatg gtgaaccgtgacgagtacctgctggggcgccccattgacaaatatgtttttgagaagatg gaggagaaggaggcaggctgctcttctgaaacaggacttctcccaggctctatctttgcc ccatcaggtgccaattcccttcttgacatggccagcaagatccgggaggacccactcttc atcatcaggaagaaggaggaggagaaaaaacgagaggtattaaataatccagtgaaaatg aagaaaatcaaagaattgttgcaaatgagtctggaaaaaaaggagaagaagaaaaagaag gagaagaaaaagaagcacaagaaacataagcacagaagctcgagtagtgatcgttccagc agcgaggatgagcacagtgcagggagatcacagaagaagatggcaaattcctcccctgtt ttgtccaaagtccctggatatggcttacaggtccggaactctgaccgtaaccagggtctt cagggtcctctgacagcagagcaaaagagagggcatgggatgaagaaccattccagatcc agaagctcctcccactcacccccaagacatgccagcaagaagagcaccagggaagcaggg tcccgggacaggaggtctcgatccctgggcagaaggtcacggtccccaagacccagcaaa ctgcacaactctaaggtgaacaggagagagacaggccaaactaggagcccatcacctaaa aaagaggtctaccaaaggcgacatgctcccggatacaccagaaaactctctgcagaggaa ttagagcgaaaacggcaagagatgatggaaaacgccaaatggagggaggaggagagactg aacatcctcaagaggcatgctaaggatgaggaacgggagcagaggctagagaagctggac tcccgggatgggaagttcatccaccgcatgaagctggagagtgcatctacttcctccctg gaggatcgggtgaagcggaatatctactctttacagagaacttcggtagctctggagaag aactttatgaaaagatga

Homo sapiens (human): 57461 Help Entry 57461             CDS       T01001                                  Symbol ISY1, FSAP33 Name (RefSeq) ISY1 spliceosome associated protein   KO K12870   pre-mRNA-splicing factor ISY1 Organism hsa  Homo sapiens (human) Pathway hsa03040   Spliceosome Network nt06547  Spliceosome   Element N01972   Spliceosome catalysis (branching) N01993   Spliceosome catalysis (exon ligation) Brite KEGG Orthology (KO) [BR:hsa00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     57461 (ISY1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:hsa03041]     57461 (ISY1) Spliceosome [BR:hsa03041]  Complex B   Other components    Prp19-related factors     57461 (ISY1)  Complex C     57461 (ISY1) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Isy1 DUF4746 DUF6494 CDC45 Motif Other DBs NCBI-GeneID:  57461 NCBI-ProteinID:  NP_065752 OMIM:  612764 HGNC:  29201 Ensembl:  ENSG00000240682 UniProt:  Q9ULR0 Structure PDBPDBj LinkDB All DBs Position 3:complement(129127415..129161063) Genome browser AA seq 285 aa AA seqDB search MARNAEKAMTALARFRQAQLEEGKVKERRPFLASECTELPKAEKWRRQIIGEISKKVAQI QNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELGGPDYGKVGPKMLDHEGKEVPGNRGY KYFGAAKDLPGVRELFEKEPLPPPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYEKK LRAELVEKWKAEREARLARGEKEEEEEEEEEINIYAVTEEESDEEGSQEKGGDDSQQKFI AHVPVPSQQEIEEALVRRKKMELLQKYASETLQAQSEEARRLLGY NT seq 858 nt NT seq  +upstreamnt  +downstreamnt atggcccgaaatgcagaaaaggccatgacggccttagcaagatttcgccaggctcagctg gaagagggaaaagtgaaggaacgaagaccctttctggcctcagaatgtactgaactgcct aaagctgagaagtggagacgacagatcattggagagatctctaaaaaagtggctcagatt cagaatgctggtttaggtgaatttcgaattcgtgacctgaatgatgaaattaacaagctg ctaagggagaaaggacactgggaggtccggataaaggagctgggaggtcctgattatgga aaagttggccctaaaatgctggatcatgaaggaaaagaagtcccaggaaaccgaggttac aagtactttggagcagcaaaagatttgcctggtgttagagagctgtttgaaaaagaacct cttcctcctcccagaaagacacgtgctgagctcatgaaggcaatcgattttgagtactat ggttacctagatgaagatgatggtgttattgtgcctttggaacaggaatatgaaaagaaa ctcagagccgagttagtggaaaagtggaaagcagagagagaggctcggctggcaagagga gaaaaggaagaggaggaggaagaggaggaagagatcaacatctatgcagtcaccgaggag gagtcggacgaggaaggcagccaggagaaaggaggggacgacagccagcagaagttcatt gctcacgtccctgttccctcgcagcaagagattgaggaggcactggtgcgaaggaagaaa atggaactcctccagaagtatgcaagcgagaccctgcaggcccaaagtgaagaagccaga aggctcctggggtattag

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