KEGG   PATHWAY: lag02010
Entry
lag02010                    Pathway                                
Name
ABC transporters - Vibrio anguillarum M3
Description
The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).
Class
Environmental Information Processing; Membrane transport
Pathway map
lag02010  ABC transporters
lag02010

Other DBs
GO: 0043190 0043191 0043192
TC: 3.A.1
Organism
Vibrio anguillarum M3 [GN:lag]
Gene
N175_00550  [KO:K09811]
N175_00555  [KO:K09812]
N175_01075  [KO:K16961]
N175_01085  [KO:K16963]
N175_01370  araH; arabinose ABC transporter permease [KO:K10538]
N175_01375  araG; arabinose ABC transporter ATP-binding protein [KO:K10539] [EC:7.5.2.12]
N175_01380  [KO:K10537]
N175_01800  [KO:K18893]
N175_01810  [KO:K10829] [EC:7.2.2.16]
N175_01815  [KO:K23227]
N175_01820  [KO:K23228]
N175_02095  [KO:K09690]
N175_02100  [KO:K09691] [EC:7.5.2.14]
N175_03305  [KO:K02064]
N175_03310  thiP; thiamine transporter membrane protein [KO:K02063]
N175_03315  artP; arginine ABC transporter ATP-binding protein [KO:K02062] [EC:7.6.2.15]
N175_03360  [KO:K06861] [EC:7.5.2.5]
N175_03395  [KO:K02065]
N175_03400  [KO:K02066]
N175_03405  [KO:K02067]
N175_03410  [KO:K07323]
N175_03415  [KO:K07122]
N175_03510  [KO:K07091]
N175_03515  [KO:K11720]
N175_04125  [KO:K06858]
N175_05565  znuB; zinc transporter [KO:K09816]
N175_05570  znuC; zinc transporter [KO:K09817] [EC:7.2.2.20]
N175_05575  [KO:K09815]
N175_05685  [KO:K02193] [EC:7.6.2.5]
N175_05690  [KO:K02194]
N175_05695  [KO:K02195]
N175_05700  [KO:K02196]
N175_06325  [KO:K15580]
N175_06330  oppB; peptide ABC transporter permease [KO:K15581]
N175_06335  [KO:K15582]
N175_06340  oppD; peptide ABC transporter ATP-binding protein [KO:K15583]
N175_06345  oppD; peptide ABC transporter ATP-binding protein [KO:K10823]
N175_06515  [KO:K09808]
N175_06520  [KO:K09810] [EC:7.6.2.-]
N175_06525  [KO:K09808]
N175_06540  [KO:K11085] [EC:7.5.2.6]
N175_06620  metN; methionine ABC transporter ATP-binding protein [KO:K10025] [EC:7.4.2.1]
N175_06625  [KO:K10022]
N175_06630  [KO:K10024]
N175_06635  [KO:K10023]
N175_07155  [KO:K06073]
N175_07160  [KO:K06074] [EC:7.6.2.8]
N175_08365  fbpC; sugar ABC transporter [KO:K02010] [EC:7.2.2.7]
N175_08370  [KO:K02011]
N175_08375  [KO:K02012]
N175_08410  potD; putrescine/spermidine ABC transporter substrate-binding protein [KO:K11069]
N175_08415  potD; putrescine/spermidine ABC transporter substrate-binding protein [KO:K11069]
N175_08420  [KO:K11070]
N175_08425  potB; putrescine/spermidine ABC transporter permease [KO:K11071]
N175_08430  [KO:K11072] [EC:7.6.2.11]
N175_08675  [KO:K09969]
N175_08680  [KO:K09970]
N175_08685  [KO:K09971]
N175_08690  [KO:K09972] [EC:7.4.2.1]
N175_08845  mglC; beta-methylgalactoside transporter [KO:K10541]
N175_08850  [KO:K10542] [EC:7.5.2.11]
N175_08855  [KO:K10540]
N175_09235  [KO:K19226]
N175_09240  [KO:K19227]
N175_09245  [KO:K19228]
N175_09250  [KO:K19229]
N175_09255  [KO:K19230]
N175_09690  [KO:K16013]
N175_09695  [KO:K16012]
N175_10020  [KO:K17315]
N175_11075  [KO:K02071]
N175_11080  [KO:K02072]
N175_11085  metQ; methionine ABC transporter substrate-binding protein [KO:K02073]
N175_11810  pstB; phosphate ABC transporter ATP-binding protein [KO:K02036] [EC:7.3.2.1]
N175_11815  [KO:K02038]
N175_11820  [KO:K02037]
N175_11835  [KO:K02040]
N175_11945  [KO:K11069]
N175_12585  [KO:K02010] [EC:7.2.2.7]
N175_12590  [KO:K02011]
N175_12595  [KO:K02012]
N175_12955  [KO:K02045] [EC:7.3.2.3]
N175_12960  cysW; sulfate/thiosulfate transporter permease subunit [KO:K02047]
N175_12965  [KO:K02046]
N175_12970  [KO:K02048]
N175_15060  [KO:K13896]
N175_15065  [KO:K13895]
N175_15070  [KO:K13894]
N175_15075  [KO:K13893]
N175_15195  modC; molybdate ABC transporter ATP-binding protein [KO:K02017] [EC:7.3.2.5]
N175_15200  [KO:K02018]
N175_15205  [KO:K02020]
N175_15460  [KO:K02002]
N175_15465  [KO:K02001]
N175_15470  [KO:K02000] [EC:7.6.2.9]
N175_15665  [KO:K02000] [EC:7.6.2.9]
N175_15670  [KO:K02001]
N175_15675  proX; glycine/betaine ABC transporter substrate-binding protein [KO:K02002]
N175_16160  malG; maltose transporter permease [KO:K10110]
N175_16165  malF; maltose transporter membrane protein [KO:K10109]
N175_16170  malE; sugar ABC transporter substrate-binding protein [KO:K10108]
N175_16175  [KO:K10111] [EC:7.5.2.-]
N175_16385  [KO:K02036] [EC:7.3.2.1]
N175_16390  [KO:K02038]
N175_16395  [KO:K02037]
N175_16400  [KO:K02040]
N175_16575  [KO:K10112] [EC:7.5.2.-]
N175_16580  [KO:K10242]
N175_16585  [KO:K10241]
N175_16590  [KO:K10240]
N175_16685  [KO:K10439]
N175_16690  rbsC; ribose ABC transporter permease [KO:K10440]
N175_16695  [KO:K10441] [EC:7.5.2.7]
N175_16700  [KO:K06726] [EC:5.4.99.62]
N175_16870  [KO:K12541]
N175_16945  [KO:K11069]
N175_17545  [KO:K18893]
N175_17625  malE; sugar ABC transporter substrate-binding protein [KO:K10108]
N175_18525  [KO:K15770]
N175_18530  [KO:K15771]
N175_18535  [KO:K15772]
N175_18635  [KO:K02040]
Compound
C00009  Orthophosphate
C00025  L-Glutamate
C00031  D-Glucose
C00032  Heme
C00034  Manganese
C00037  Glycine
C00038  Zinc cation
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00051  Glutathione
C00059  Sulfate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00070  Copper
C00077  L-Ornithine
C00079  L-Phenylalanine
C00086  Urea
C00088  Nitrite
C00089  Sucrose
C00093  sn-Glycerol 3-phosphate
C00095  D-Fructose
C00098  Oligopeptide
C00107  Dipeptide
C00114  Choline
C00116  Glycerol
C00120  Biotin
C00121  D-Ribose
C00123  L-Leucine
C00134  Putrescine
C00135  L-Histidine
C00137  myo-Inositol
C00140  N-Acetyl-D-glucosamine
C00148  L-Proline
C00151  L-Amino acid
C00159  D-Mannose
C00175  Cobalt ion
C00181  D-Xylose
C00183  L-Valine
C00185  Cellobiose
C00188  L-Threonine
C00208  Maltose
C00212  Adenosine
C00243  Lactose
C00244  Nitrate
C00245  Taurine
C00255  Riboflavin
C00259  L-Arabinose
C00288  HCO3-
C00291  Nickel
C00294  Inosine
C00299  Uridine
C00315  Spermidine
C00320  Thiosulfate
C00330  Deoxyguanosine
C00333  D-Galacturonate
C00338  Lipopolysaccharide
C00378  Thiamine
C00379  Xylitol
C00387  Guanosine
C00392  Mannitol
C00407  L-Isoleucine
C00430  5-Aminolevulinate
C00470  Pectate
C00475  Cytidine
C00487  Carnitine
C00491  L-Cystine
C00492  Raffinose
C00503  Erythritol
C00526  Deoxyuridine
C00559  Deoxyadenosine
C00719  Betaine
C00794  D-Sorbitol
C00855  D-Methionine
C00865  Phospholipid
C00881  Deoxycytidine
C00919  Choline sulfate
C00973  Cyclomaltodextrin
C01083  alpha,alpha-Trehalose
C01153  Orthophosphoric monoester
C01157  Hydroxyproline
C01177  Inositol 1-phosphate
C01181  4-Trimethylammoniobutanoate
C01279  4-Amino-5-hydroxymethyl-2-methylpyrimidine
C01330  Sodium cation
C01417  Cyanate
C01487  D-Allose
C01606  Phthalate
C01630  Xylobiose
C01667  Bacitracin
C01674  Chitobiose
C01682  Nopaline
C01684  D-Rhamnose
C01762  Xanthosine
C01834  Lipoprotein
C01835  Maltotriose
C01935  Maltodextrin
C01946  Oleandomycin
C02160  Isomaltotriose
C02273  Digalacturonate
C03557  2-Aminoethylphosphonate
C03611  Galactose oligosaccharide
C03619  Methyl beta-D-galactoside
C04114  (E)-4-(Trimethylammonio)but-2-enoate
C04137  Octopine
C05349  Ciprofloxacin
C05402  Melibiose
C05512  Deoxyinosine
C05776  Vitamin B12
C06227  Fe(III)hydroxamate
C06229  Fe(III)dicitrate
C06230  Fe-enterobactin
C06232  Molybdate
C06687  Norfloxacin
C06705  Capsular polysaccharide
C06706  Lipo-oligosaccharide
C06707  Teichoic acid
C06767  Hemine
C07662  Sparfloxacin
C07663  Moxifloxacin
C11612  Polymyxin B
C13768  Colistin sulfate
C14818  Fe2+
C14819  Fe3+
C15521  Alkanesulfonate
C15719  Coelichelin
C16421  AI-2
C16692  Mannopine
C19609  Nickel(2+)
C19872  N-Formyl-4-amino-5-aminomethyl-2-methylpyrimidine
C20570  alpha-1,5-L-Arabinobiose
C20571  alpha-1,5-L-Arabinotriose
C20572  alpha-1,5-L-Arabinotetraose
C20573  Aldotetraouronic acid
C20679  Tungstate
C21066  D-Galactofuranose
C22040  S-Methyl-L-cysteine
G00457  Maltotetraose
Reference
PMID:9799792
  Authors
Tomii K, Kanehisa M.
  Title
A comparative analysis of ABC transporters in complete microbial genomes.
  Journal
Genome Res 8:1048-59 (1998)
DOI:10.1101/gr.8.10.1048
Reference
  Authors
Sperandeo P, Lau FK, Carpentieri A, De Castro C, Molinaro A, Deho G, Silhavy TJ, Polissi A
  Title
Functional analysis of the protein machinery required for transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
J Bacteriol 190:4460-9 (2008)
DOI:10.1128/JB.00270-08
Reference
  Authors
Ruiz N, Gronenberg LS, Kahne D, Silhavy TJ
  Title
Identification of two inner-membrane proteins required for the transport of lipopolysaccharide to the outer membrane of Escherichia coli.
  Journal
Proc Natl Acad Sci U S A 105:5537-42 (2008)
DOI:10.1073/pnas.0801196105
Reference
  Authors
Omata T, Price GD, Badger MR, Okamura M, Gohta S, Ogawa T
  Title
Identification of an ATP-binding cassette transporter involved in bicarbonate uptake in the cyanobacterium Synechococcus sp. strain PCC 7942.
  Journal
Proc Natl Acad Sci U S A 96:13571-6 (1999)
DOI:10.1073/pnas.96.23.13571
Reference
  Authors
Quintero MJ, Montesinos ML, Herrero A, Flores E
  Title
Identification of genes encoding amino acid permeases by inactivation of selected ORFs from the Synechocystis genomic sequence.
  Journal
Genome Res 11:2034-40 (2001)
DOI:10.1101/gr.196301
Reference
  Authors
Picossi S, Montesinos ML, Pernil R, Lichtle C, Herrero A, Flores E
  Title
ABC-type neutral amino acid permease N-I is required for optimal diazotrophic growth and is repressed in the heterocysts of Anabaena sp. strain PCC 7120.
  Journal
Mol Microbiol 57:1582-92 (2005)
DOI:10.1111/j.1365-2958.2005.04791.x
Reference
  Authors
Valladares A, Montesinos ML, Herrero A, Flores E.
  Title
An ABC-type, high-affinity urea permease identified in cyanobacteria.
  Journal
Mol Microbiol 43:703-15 (2002)
DOI:10.1046/j.1365-2958.2002.02778.x
Reference
  Authors
Richard-Fogal CL, Frawley ER, Kranz RG
  Title
Topology and function of CcmD in cytochrome c maturation.
  Journal
J Bacteriol 190:3489-93 (2008)
DOI:10.1128/JB.00146-08
Reference
  Authors
Suzuki H, Koyanagi T, Izuka S, Onishi A, Kumagai H
  Title
The yliA, -B, -C, and -D genes of Escherichia coli K-12 encode a novel glutathione importer with an ATP-binding cassette.
  Journal
J Bacteriol 187:5861-7 (2005)
DOI:10.1128/JB.187.17.5861-5867.2005
Reference
  Authors
Novikova M, Metlitskaya A, Datsenko K, Kazakov T, Kazakov A, Wanner B, Severinov K
  Title
The Escherichia coli Yej transporter is required for the uptake of translation inhibitor microcin C.
  Journal
J Bacteriol 189:8361-5 (2007)
DOI:10.1128/JB.01028-07
Reference
  Authors
Tikhonova EB, Devroy VK, Lau SY, Zgurskaya HI
  Title
Reconstitution of the Escherichia coli macrolide transporter: the periplasmic membrane fusion protein MacA stimulates the ATPase activity of MacB.
  Journal
Mol Microbiol 63:895-910 (2007)
DOI:10.1111/j.1365-2958.2006.05549.x
Reference
  Authors
Yamanaka H, Kobayashi H, Takahashi E, Okamoto K
  Title
MacAB is involved in the secretion of Escherichia coli heat-stable enterotoxin II.
  Journal
J Bacteriol 190:7693-8 (2008)
DOI:10.1128/JB.00853-08
KO pathway
ko02010   

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