KEGG   PATHWAY: lcat04710
Entry
lcat04710                   Pathway                                
Name
Circadian rhythm - Lemur catta (Ring-tailed lemur)
Description
Circadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of cell-autonomous transcription-translation feedback loops that drive rhythmic, 24-hour expression patterns of core clock components. The first negative feedback loop is a rhythmic transcription of period genes (PER1, PER2, and PER3) and chryptochrome genes (CRY1 and CRY2). PER and CRY proteins form a heterodimer, which acts on the CLOCK/BMAL1 heterodimer to repress its own transcription. PER and CRY proteins are phosphorylated by casein kinase epsilon (CKIepsilon), which leads to degradation and restarting of the cycle. The second loop is a positive feedback loop driven by the CLOCK/BMAL1 heterodimer, which initiates transcription of target genes containing E-box cis-regulatory enhancer sequences.
Class
Organismal Systems; Environmental adaptation
Pathway map
lcat04710  Circadian rhythm
lcat04710

Other DBs
GO: 0007623
Organism
Lemur catta (Ring-tailed lemur) [GN:lcat]
Gene
123620856  NR1D1; nuclear receptor subfamily 1 group D member 1 [KO:K03728]
123623449  RORA; nuclear receptor ROR-alpha [KO:K08532]
123623641  BHLHE40; class E basic helix-loop-helix protein 40 [KO:K03729]
123623866  [KO:K09056]
123624845  CLOCK; circadian locomoter output cycles protein kaput isoform X1 [KO:K02223] [EC:2.3.1.48]
123625945  PRKAB1; 5'-AMP-activated protein kinase subunit beta-1 [KO:K07199]
123628295  NR1D2; nuclear receptor subfamily 1 group D member 2 [KO:K08531]
123628677  [KO:K03094]
123633859  PRKAB2; 5'-AMP-activated protein kinase subunit beta-2 isoform X1 [KO:K07199]
123634532  PER3; period circadian protein homolog 3 isoform X1 [KO:K21945]
123635130  RORC; nuclear receptor ROR-gamma isoform X1 [KO:K08534]
123635597  PRKAA2; 5'-AMP-activated protein kinase catalytic subunit alpha-2 [KO:K07198] [EC:2.7.11.31]
123637261  NPAS2; neuronal PAS domain-containing protein 2 isoform X1 [KO:K09026]
123637776  SKP1; S-phase kinase-associated protein 1 [KO:K03094]
123637797  [KO:K10287]
123637962  FBXW11; F-box/WD repeat-containing protein 11 isoform X1 [KO:K03362]
123639258  [KO:K08960] [EC:2.7.11.1]
123639337  CRY1; cryptochrome-1 [KO:K02295]
123639918  BHLHE41; class E basic helix-loop-helix protein 41 [KO:K03730]
123640318  RBX1; E3 ubiquitin-protein ligase RBX1 isoform X1 [KO:K03868] [EC:2.3.2.32]
123640431  PRKAG1; 5'-AMP-activated protein kinase subunit gamma-1 isoform X1 [KO:K07200]
123642460  ARNTL; aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1 [KO:K02296]
123642636  CRY2; cryptochrome-2 isoform X1 [KO:K02295]
123643221  PER2; period circadian protein homolog 2 isoform X1 [KO:K02633]
123643998  PRKAG3; 5'-AMP-activated protein kinase subunit gamma-3 isoform X1 [KO:K07200]
123644072  [KO:K03362]
123644073  CREB1; cyclic AMP-responsive element-binding protein 1 isoform X1 [KO:K05870]
123645748  RORB; nuclear receptor ROR-beta isoform X1 [KO:K08533]
123645958  NFIL3; nuclear factor interleukin-3-regulated protein [KO:K09059]
123647562  CUL1; cullin-1 isoform X1 [KO:K03347]
123647682  PRKAG2; 5'-AMP-activated protein kinase subunit gamma-2 isoform X1 [KO:K07200]
123648605  PRKAA1; 5'-AMP-activated protein kinase catalytic subunit alpha-1 isoform X1 [KO:K07198] [EC:2.7.11.31]
123648855  FBXL3; F-box/LRR-repeat protein 3 [KO:K10269]
123650108  BTRC; F-box/WD repeat-containing protein 1A isoform X1 [KO:K03362]
123650734  CSNK1D; casein kinase I isoform X1 [KO:K08959] [EC:2.7.11.1]
123650921  PER1; period circadian protein homolog 1 isoform X1 [KO:K21944]
Compound
C00076  Calcium cation
C00575  3',5'-Cyclic AMP
Reference
  Authors
Takahashi JS
  Title
Transcriptional architecture of the mammalian circadian clock.
  Journal
Nat Rev Genet 18:164-179 (2017)
DOI:10.1038/nrg.2016.150
Reference
  Authors
Wang S, Li F, Lin Y, Wu B
  Title
Targeting REV-ERBalpha for therapeutic purposes: promises and challenges.
  Journal
Theranostics 10:4168-4182 (2020)
DOI:10.7150/thno.43834
Reference
  Authors
Panda S, Hogenesch JB, Kay SA.
  Title
Circadian rhythms from flies to human.
  Journal
Nature 417:329-35 (2002)
DOI:10.1038/417329a
Reference
  Authors
Honma S, Kawamoto T, Takagi Y, Fujimoto K, Sato F, Noshiro M, Kato Y, Honma K.
  Title
Dec1 and Dec2 are regulators of the mammalian molecular clock.
  Journal
Nature 419:841-4 (2002)
DOI:10.1038/nature01123
Reference
  Authors
Fu L, Lee CC.
  Title
The circadian clock: pacemaker and tumour suppressor.
  Journal
Nat Rev Cancer 3:350-61 (2003)
DOI:10.1038/nrc1072
Reference
  Authors
Schibler U, Sassone-Corsi P.
  Title
A web of circadian pacemakers.
  Journal
Cell 111:919-22 (2002)
DOI:10.1016/S0092-8674(02)01225-4
Reference
  Authors
Takahashi JS, Hong HK, Ko CH, McDearmon EL
  Title
The genetics of mammalian circadian order and disorder: implications for physiology and disease.
  Journal
Nat Rev Genet 9:764-75 (2008)
DOI:10.1038/nrg2430
Related
pathway
lcat04010  MAPK signaling pathway
lcat04120  Ubiquitin mediated proteolysis
lcat04713  Circadian entrainment
KO pathway
ko04710   

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