KEGG   PATHWAY: lmic03430
Entry
lmic03430                   Pathway                                
Name
Mismatch repair - Larus michahellis (yellow-legged gull)
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
lmic03430  Mismatch repair
lmic03430

Other DBs
GO: 0006298
Organism
Larus michahellis (yellow-legged gull) [GN:lmic]
Gene
141733144  RPA2; replication protein A 32 kDa subunit [KO:K10739]
141733314  PCNA; proliferating cell nuclear antigen [KO:K04802]
141733327  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
141735153  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
141736058  MSH3; DNA mismatch repair protein Msh3 [KO:K08736]
141737491  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
141738792  RPA3; replication protein A 14 kDa subunit [KO:K10740]
141739012  MLH1; DNA mismatch repair protein Mlh1 [KO:K08734]
141740045  EXO1; exonuclease 1 [KO:K10746] [EC:3.1.-.-]
141740350  MSH6; DNA mismatch repair protein Msh6 isoform X1 [KO:K08737]
141740353  MSH2; DNA mismatch repair protein Msh2 [KO:K08735]
141742603  MLH3; DNA mismatch repair protein Mlh3 [KO:K08739]
141742909  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
141743512  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
141745472  RFC4; replication factor C subunit 4 [KO:K10755]
141746258  RFC2; replication factor C subunit 2 [KO:K10755]
141746613  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
141747769  PMS2; mismatch repair endonuclease PMS2 [KO:K10858]
141750569  RFC5; replication factor C subunit 5 isoform X1 [KO:K10756]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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