KEGG   PATHWAY: lmol00020
Entry
lmol00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Listeria monocytogenes L312 (serotype 4b)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lmol00020  Citrate cycle (TCA cycle)
lmol00020

Module
lmol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lmol00020]
lmol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lmol00020]
Other DBs
GO: 0006099
Organism
Listeria monocytogenes L312 (serotype 4b) [GN:lmol]
Gene
LMOL312_1567  citZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
LMOL312_1643  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LMOL312_1566  citC; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
LMOL312_1056  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMOL312_1367  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LMOL312_2244  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
LMOL312_1069  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LMOL312_1053  pdhA; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit [KO:K00161] [EC:1.2.4.1]
LMOL312_1054  pdhB; pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase beta subunit [KO:K00162] [EC:1.2.4.1]
LMOL312_1055  pdhC; pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
LMOL312_0829  pyruvate flavodoxin/ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lmol00010  Glycolysis / Gluconeogenesis
lmol00061  Fatty acid biosynthesis
lmol00071  Fatty acid degradation
lmol00190  Oxidative phosphorylation
lmol00220  Arginine biosynthesis
lmol00250  Alanine, aspartate and glutamate metabolism
lmol00280  Valine, leucine and isoleucine degradation
lmol00350  Tyrosine metabolism
lmol00470  D-Amino acid metabolism
lmol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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