KEGG   PATHWAY: lmy00020
Entry
lmy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Listeria monocytogenes 08-5923 (serotype 1/2a)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lmy00020  Citrate cycle (TCA cycle)
lmy00020

Module
lmy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lmy00020]
lmy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lmy00020]
Other DBs
GO: 0006099
Organism
Listeria monocytogenes 08-5923 (serotype 1/2a) [GN:lmy]
Gene
LM5923_1665  citZ; methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
LM5923_1740  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LM5923_1664  citC; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LM5923_1092  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LM5923_1463  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LM5923_2379  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LM5923_1109  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LM5923_1089  pdhA; hypothetical protein [KO:K00161] [EC:1.2.4.1]
LM5923_1090  pdhB; hypothetical protein [KO:K00162] [EC:1.2.4.1]
LM5923_1091  pdhC; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
LM5923_0863  nifJ; hypothetical protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lmy00010  Glycolysis / Gluconeogenesis
lmy00061  Fatty acid biosynthesis
lmy00071  Fatty acid degradation
lmy00190  Oxidative phosphorylation
lmy00220  Arginine biosynthesis
lmy00250  Alanine, aspartate and glutamate metabolism
lmy00280  Valine, leucine and isoleucine degradation
lmy00350  Tyrosine metabolism
lmy00470  D-Amino acid metabolism
lmy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system