KEGG   PATHWAY: lpj00020
Entry
lpj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Lactiplantibacillus plantarum JDM1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lpj00020  Citrate cycle (TCA cycle)
lpj00020

Module
lpj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lpj00020]
Other DBs
GO: 0006099
Organism
Lactiplantibacillus plantarum JDM1 [GN:lpj]
Gene
JDM1_0917  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JDM1_1792  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
JDM1_1802  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
JDM1_1803  pdhC; pyruvate dehydrogenase complex, E2 component; dihydrolipoamide S-acetyltransferase [KO:K00627] [EC:2.3.1.12]
JDM1_1804  pdhB; pyruvate dehydrogenase complex, E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
JDM1_1805  pdhA; pyruvate dehydrogenase complex, E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
JDM1_2721  pck; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lpj00010  Glycolysis / Gluconeogenesis
lpj00053  Ascorbate and aldarate metabolism
lpj00061  Fatty acid biosynthesis
lpj00190  Oxidative phosphorylation
lpj00220  Arginine biosynthesis
lpj00250  Alanine, aspartate and glutamate metabolism
lpj00280  Valine, leucine and isoleucine degradation
lpj00350  Tyrosine metabolism
lpj00470  D-Amino acid metabolism
lpj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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