KEGG   PATHWAY: mana00020
Entry
mana00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Methylomusa anaerophila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mana00020  Citrate cycle (TCA cycle)
mana00020

Module
mana_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mana00020]
mana_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mana00020]
Other DBs
GO: 0006099
Organism
Methylomusa anaerophila [GN:mana]
Gene
MAMMFC1_00487  [KO:K00176] [EC:1.2.7.3]
MAMMFC1_00488  porC_1; pyruvate synthase subunit PorC [KO:K00177] [EC:1.2.7.3]
MAMMFC1_00489  korB_1; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MAMMFC1_00490  korA_1; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MAMMFC1_00555  nifJ_1; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
MAMMFC1_00560  porC_2; pyruvate synthase subunit PorC [KO:K00177] [EC:1.2.7.3]
MAMMFC1_00561  korB_2; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MAMMFC1_00562  korA_2; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MAMMFC1_00563  [KO:K00176] [EC:1.2.7.3]
MAMMFC1_00751  nifJ_2; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
MAMMFC1_01432  nifJ_3; pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
MAMMFC1_01658  korA_3; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MAMMFC1_01659  korB_3; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MAMMFC1_01812  [KO:K00176] [EC:1.2.7.3]
MAMMFC1_01813  korA_4; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MAMMFC1_01814  korB_4; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MAMMFC1_01815  [KO:K00177] [EC:1.2.7.3]
MAMMFC1_02677  fumA; fumarate hydratase class I, aerobic [KO:K01678] [EC:4.2.1.2]
MAMMFC1_02678  ttdA; L(+)-tartrate dehydratase subunit alpha [KO:K01677] [EC:4.2.1.2]
MAMMFC1_02878  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
MAMMFC1_03017  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
MAMMFC1_03302  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
MAMMFC1_03782  porD; pyruvate synthase subunit PorD [KO:K00176] [EC:1.2.7.3]
MAMMFC1_03783  korA_5; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
MAMMFC1_03784  korB_5; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
MAMMFC1_03785  porC_3; pyruvate synthase subunit PorC [KO:K00177] [EC:1.2.7.3]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mana00010  Glycolysis / Gluconeogenesis
mana00053  Ascorbate and aldarate metabolism
mana00061  Fatty acid biosynthesis
mana00071  Fatty acid degradation
mana00190  Oxidative phosphorylation
mana00220  Arginine biosynthesis
mana00250  Alanine, aspartate and glutamate metabolism
mana00280  Valine, leucine and isoleucine degradation
mana00350  Tyrosine metabolism
mana00470  D-Amino acid metabolism
mana00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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