KEGG   PATHWAY: mdo03030
Entry
mdo03030                    Pathway                                
Name
DNA replication - Monodelphis domestica (gray short-tailed opossum)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mdo03030  DNA replication
mdo03030

Organism
Monodelphis domestica (gray short-tailed opossum) [GN:mdo]
Gene
100009892  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
100010006  POLE3; DNA polymerase epsilon 3, accessory subunit [KO:K02326] [EC:2.7.7.7]
100011328  POLA1; DNA polymerase alpha 1, catalytic subunit [KO:K02320] [EC:2.7.7.7]
100012289  FEN1; flap structure-specific endonuclease 1 [KO:K04799] [EC:3.1.-.-]
100012357  MCM6; minichromosome maintenance complex component 6 [KO:K02542] [EC:5.6.2.3]
100013668  MCM3; minichromosome maintenance complex component 3 [KO:K02541] [EC:5.6.2.3]
100014496  [KO:K10739]
100014611  [KO:K10739]
100014853  POLD4; DNA polymerase delta 4, accessory subunit [KO:K03505]
100014931  DNA2; DNA replication helicase/nuclease 2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
100015098  PRIM2; primase (DNA) subunit 2 [KO:K02685]
100016281  RFC4; replication factor C subunit 4 [KO:K10755]
100016494  MCM5; minichromosome maintenance complex component 5 [KO:K02209] [EC:5.6.2.3]
100018145  MCM7; minichromosome maintenance complex component 7 [KO:K02210] [EC:5.6.2.3]
100018297  SSBP1; single stranded DNA binding protein 1 [KO:K03111]
100018386  RPA1; replication protein A1 [KO:K07466]
100020774  RFC3; replication factor C subunit 3 [KO:K10756]
100022156  RFC1; replication factor C subunit 1 [KO:K10754]
100023612  RFC5; replication factor C subunit 5 [KO:K10756]
100027569  POLE; DNA polymerase epsilon, catalytic subunit [KO:K02324] [EC:2.7.7.7]
100027730  MCM2; minichromosome maintenance complex component 2 [KO:K02540] [EC:5.6.2.3]
100028306  RNASEH2B; ribonuclease H2 subunit B [KO:K10744]
100028831  RPA3; replication protein A3 [KO:K10740]
100028960  POLE2; DNA polymerase epsilon 2, accessory subunit [KO:K02325] [EC:2.7.7.7]
100029293  PCNA; proliferating cell nuclear antigen [KO:K04802]
100030029  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
100030097  POLD2; DNA polymerase delta 2, accessory subunit [KO:K02328]
100030274  POLA2; DNA polymerase alpha 2, accessory subunit [KO:K02321]
100030676  MCM4; minichromosome maintenance complex component 4 [KO:K02212] [EC:5.6.2.3]
100031446  PRIM1; primase (DNA) subunit 1 [KO:K02684] [EC:2.7.7.102]
100032292  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
100032850  POLE4; DNA polymerase epsilon 4, accessory subunit [KO:K03506] [EC:2.7.7.7]
100618118  POLD3; DNA polymerase delta 3, accessory subunit [KO:K03504]
100619149  RFC2; replication factor C subunit 2 [KO:K10755]
103105931  [KO:K03469] [EC:3.1.26.4]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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