KEGG   PATHWAY: mmur03030
Entry
mmur03030                   Pathway                                
Name
DNA replication - Microcebus murinus (gray mouse lemur)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mmur03030  DNA replication
mmur03030

Organism
Microcebus murinus (gray mouse lemur) [GN:mmur]
Gene
105856712  RPA4; replication protein A 30 kDa subunit [KO:K10741]
105857625  MCM6; DNA replication licensing factor MCM6 isoform X1 [KO:K02542] [EC:5.6.2.3]
105857919  [KO:K02540] [EC:5.6.2.3]
105857972  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X2 [KO:K07466]
105858401  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
105858838  RFC2; replication factor C subunit 2 [KO:K10755]
105860372  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
105863567  RPA2; LOW QUALITY PROTEIN: replication protein A 32 kDa subunit [KO:K10739]
105863855  PRIM2; DNA primase large subunit [KO:K02685]
105863960  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
105865399  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
105865533  POLD1; LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
105865755  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
105866046  PCNA; proliferating cell nuclear antigen [KO:K04802]
105866857  RFC5; replication factor C subunit 5 [KO:K10756]
105867251  RPA3; replication protein A 14 kDa subunit [KO:K10740]
105867275  [KO:K02685]
105867469  POLD4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
105867650  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
105868306  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
105868771  [KO:K02540] [EC:5.6.2.3]
105869198  MCM3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
105869349  LIG1; DNA ligase 1 isoform X1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
105870227  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
105870523  RNASEH1; ribonuclease H1 isoform X1 [KO:K03469] [EC:3.1.26.4]
105873268  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
105873698  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
105878515  POLA2; DNA polymerase alpha subunit B [KO:K02321]
105878537  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
105878624  FEN1; LOW QUALITY PROTEIN: flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
105881132  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
105882340  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
105883691  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
105884566  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
105885058  RFC4; replication factor C subunit 4 [KO:K10755]
105885242  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
105885513  RNASEH2A; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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