KEGG   PATHWAY: nfa00920
Entry
nfa00920                    Pathway                                
Name
Sulfur metabolism - Nocardia farcinica IFM 10152
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
nfa00920  Sulfur metabolism
nfa00920

Module
nfa_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:nfa00920]
Other DBs
GO: 0006790
Organism
Nocardia farcinica IFM 10152 [GN:nfa]
Gene
NFA_14040  putative transporter [KO:K23163]
NFA_14050  putative sulfate ABC transporter permease [KO:K02046]
NFA_14060  putative sulfate ABC transporter permease [KO:K02047]
NFA_14070  putative sulfate ABC transporter ATP-binding protein [KO:K02045] [EC:7.3.2.3]
NFA_11560  hypothetical protein [KO:K15553]
NFA_11490  putative ABC transporter substrate-binding protein [KO:K15553]
NFA_18260  hypothetical protein [KO:K15553]
NFA_24440  hypothetical protein [KO:K15553]
NFA_43430  hypothetical protein [KO:K15553]
NFA_43390  putative transporter [KO:K15554]
NFA_11500  putative ABC transporter membrane protein [KO:K15554]
NFA_18270  putative transporter [KO:K15554]
NFA_24430  putative ABC transporter permease [KO:K15554]
NFA_18280  putative ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
NFA_43400  putative ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
NFA_11510  putative ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
NFA_24420  putative ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
NFA_11540  putative alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
NFA_12010  putative alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
NFA_11530  putative alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
NFA_23490  hypothetical protein [KO:K00299] [EC:1.5.1.38]
NFA_54320  hypothetical protein [KO:K00299] [EC:1.5.1.38]
NFA_24540  cysN2; putative sulfate adenylyltransferase subunit 1 [KO:K00955] [EC:2.7.7.4 2.7.1.25]
NFA_33920  putative ATP sulfurylase large subunit [KO:K00955] [EC:2.7.7.4 2.7.1.25]
NFA_14160  cysN; putative sulfate adenylyltransferase subunit 1 [KO:K00956] [EC:2.7.7.4]
NFA_24550  cysD2; putative sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
NFA_33930  putative ATP sulfurylase small subunit [KO:K00957] [EC:2.7.7.4]
NFA_14170  cysD; putative sulfate adenylyltransferase subunit 2 [KO:K00957] [EC:2.7.7.4]
NFA_33910  putative inositol monophosphatase [KO:K01082] [EC:3.1.3.7]
NFA_40640  putative phosphoesterase [KO:K06881] [EC:3.1.3.7 3.1.13.3]
NFA_14180  cysH; putative phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
NFA_51300  hypothetical protein [KO:K00380] [EC:1.8.1.2]
NFA_14190  cysI; putative sulfite reductase [KO:K00392] [EC:1.8.7.1]
NFA_10240  putative thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
NFA_5940  putative thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
NFA_9900  putative thiosulfate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
NFA_51510  hypothetical protein [KO:K01738] [EC:2.5.1.47]
PNF1_580  putative pyridoxal-phosphate dependent enzyme [KO:K01738] [EC:2.5.1.47]
NFA_9220  putative homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
NFA_48270  metB; putative cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
NFA_53590  metZ; putative O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
NFA_54330  putative monooxygenase [KO:K17228] [EC:1.14.14.35]
NFA_22060  hypothetical protein [KO:K21310] [EC:2.1.1.334]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
nfa00260  Glycine, serine and threonine metabolism
nfa00270  Cysteine and methionine metabolism
nfa00680  Methane metabolism
nfa00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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