KEGG   PATHWAY: nnv00920
Entry
nnv00920                    Pathway                                
Name
Sulfur metabolism - Neobacillus novalis
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
nnv00920  Sulfur metabolism
nnv00920

Module
nnv_M00021  Cysteine biosynthesis, serine => cysteine [PATH:nnv00920]
nnv_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:nnv00920]
Other DBs
GO: 0006790
Organism
Neobacillus novalis [GN:nnv]
Gene
QNH39_15605  ABC transporter substrate-binding protein [KO:K15553]
QNH39_04365  ABC transporter substrate-binding protein [KO:K15553]
QNH39_15610  ABC transporter permease [KO:K15554]
QNH39_04360  ABC transporter permease [KO:K15554]
QNH39_15615  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
QNH39_04355  ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
QNH39_01420  NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
QNH39_04235  NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
QNH39_11900  sat; sulfate adenylyltransferase [KO:K00958] [EC:2.7.7.4]
QNH39_14245  sat; sulfate adenylyltransferase [KO:K00958] [EC:2.7.7.4]
QNH39_11905  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
QNH39_14240  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
QNH39_20335  bifunctional oligoribonuclease/PAP phosphatase NrnA [KO:K06881] [EC:3.1.3.7 3.1.13.3]
QNH39_11890  phosphoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
QNH39_14250  phosphoadenylyl-sulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
QNH39_11920  assimilatory sulfite reductase (NADPH) flavoprotein subunit [KO:K00380] [EC:1.8.1.2]
QNH39_04145  sulfite reductase subunit alpha [KO:K00380] [EC:1.8.1.2]
QNH39_11925  cysI; assimilatory sulfite reductase (NADPH) hemoprotein subunit [KO:K00381] [EC:1.8.1.2]
QNH39_15385  DoxX family protein [KO:K16937] [EC:1.8.5.2]
QNH39_15430  DoxX family protein [KO:K16937] [EC:1.8.5.2]
QNH39_26090  DoxX family protein [KO:K16937] [EC:1.8.5.2]
QNH39_05365  DoxX family protein [KO:K16937] [EC:1.8.5.2]
QNH39_05480  DoxX family membrane protein [KO:K16937] [EC:1.8.5.2]
QNH39_06740  DoxX family protein [KO:K16937] [EC:1.8.5.2]
QNH39_17150  sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
QNH39_23925  hypothetical protein [KO:K00640] [EC:2.3.1.30]
QNH39_00590  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
QNH39_00425  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
QNH39_04370  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
QNH39_17085  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
QNH39_21755  methionine biosynthesis PLP-dependent protein [KO:K01739] [EC:2.5.1.48]
QNH39_19435  bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase [KO:K17217] [EC:4.4.1.1 4.4.1.2]
QNH39_18430  LLM class flavin-dependent oxidoreductase [KO:K17228] [EC:1.14.14.35]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
nnv00260  Glycine, serine and threonine metabolism
nnv00270  Cysteine and methionine metabolism
nnv00680  Methane metabolism
nnv00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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