KEGG   PATHWAY: oga03030
Entry
oga03030                    Pathway                                
Name
DNA replication - Otolemur garnettii (small-eared galago)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
oga03030  DNA replication
oga03030

Organism
Otolemur garnettii (small-eared galago) [GN:oga]
Gene
100941209  POLD1; LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
100941883  SSBP1; single-stranded DNA-binding protein, mitochondrial [KO:K03111]
100943060  POLD4; DNA polymerase delta subunit 4 [KO:K03505]
100943766  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
100944057  MCM4; LOW QUALITY PROTEIN: DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
100944334  RNASEH2A; ribonuclease H2 subunit A isoform X1 [KO:K10743] [EC:3.1.26.4]
100945159  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
100945362  RFC5; replication factor C subunit 5 [KO:K10756]
100946214  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
100946474  [KO:K10740]
100946632  POLE; DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
100947282  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
100948408  MCM3; DNA replication licensing factor MCM3 [KO:K02541] [EC:5.6.2.3]
100948470  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
100950536  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
100951389  POLA2; DNA polymerase alpha subunit B [KO:K02321]
100951585  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
100951739  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
100952139  RFC3; replication factor C subunit 3 [KO:K10756]
100952658  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
100954041  RPA2; replication protein A 32 kDa subunit [KO:K10739]
100954965  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
100955279  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
100956886  LIG1; DNA ligase 1 isoform X2 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
100957112  PCNA; proliferating cell nuclear antigen [KO:K04802]
100958445  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
100959059  RNASEH2C; ribonuclease H2 subunit C [KO:K10745]
100959346  RFC4; replication factor C subunit 4 [KO:K10755]
100959441  POLE2; DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
100960097  POLD3; DNA polymerase delta subunit 3 isoform X2 [KO:K03504]
100964196  RPA3; replication protein A 14 kDa subunit [KO:K10740]
100964416  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
100965019  POLD2; DNA polymerase delta subunit 2 [KO:K02328]
100965393  PRIM2; DNA primase large subunit isoform X1 [KO:K02685]
100965737  RFC2; replication factor C subunit 2 [KO:K10755]
100965996  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
111722454  RPA4; LOW QUALITY PROTEIN: replication protein A 30 kDa subunit [KO:K10741]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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