KEGG   PATHWAY: omc00534
Entry
omc00534                    Pathway                                
Name
Glycosaminoglycan biosynthesis - heparan sulfate / heparin - Onychostoma macrolepis
Description
Heparan sulfate (HS) and heparin (Hep) are glycosaminoglycans with repeating disaccharide units that consist of alternating residues of alpha-D-glucosamine (GlcN) and uronic acid, the latter being either beta-D-glucuronic acid (GlcA) or alpha-L-iduronic acid (IdoA). In these sugar residues, sulfation modification may be performed at various positions. Structural studies show that Hep possesses a higher degree of sulfation than HS. The biosynthesis of HS/Hep occurs with the addition of the first GlcNAc residue by EXTL3 glycosyltransferase after completion of tetrasaccharide linkage region attached to serine residue of a core protein. The chain polymeraization is then catalyzed by EXT1 and EXT2 transferases. As the chain polymerizes, HS/Hep undergoes a series of modification reactions including N-deacetylation, N-sulfation, epimerization, and subsequently O-sulfation. As final products of biosynthesis, HS is present in the form of hepran sulfate proteoglycan (HSPG) whereas Hep exists as a sugar chain without a core protein. The proteoglycan families with HS, as well as CS (chondroitin sulfate), DS (dermatan sulfate), and KS (keratan sulfate), are composed of two main types depending on the subcellular locations: cell membrane and extracellular matrix [BR:00535]. HS/Hep has been shown to bind to a variety of molecules, such as growth factors, chemokines, morphogens, and extracellular matrix components [BR:00536].
Class
Metabolism; Glycan biosynthesis and metabolism
Pathway map
omc00534  Glycosaminoglycan biosynthesis - heparan sulfate / heparin
omc00534

Module
omc_M00057  Glycosaminoglycan biosynthesis, linkage tetrasaccharide [PATH:omc00534]
omc_M00059  Glycosaminoglycan biosynthesis, heparan sulfate backbone [PATH:omc00534]
Other DBs
GO: 0030210
Organism
Onychostoma macrolepis [GN:omc]
Gene
131537080  xylt1; xylosyltransferase 1 [KO:K00771] [EC:2.4.2.26]
131537143  xylt2; xylosyltransferase 2 isoform X1 [KO:K00771] [EC:2.4.2.26]
131553874  b4galt7; beta-1,4-galactosyltransferase 7 isoform X1 [KO:K00733] [EC:2.4.1.133]
131549749  b3galt6; beta-1,3-galactosyltransferase 6 [KO:K00734] [EC:2.4.1.134]
131544528  b3gat3; galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3 [KO:K10158] [EC:2.4.1.135]
131553750  extl2; exostosin-like 2 [KO:K02369] [EC:2.4.1.223]
131527401  extl3; exostosin-like 3 [KO:K02370] [EC:2.4.1.223 2.4.1.224]
131525465  exostosin-1c [KO:K02366] [EC:2.4.1.224 2.4.1.225]
131526332  ext1b; exostosin-1b [KO:K02366] [EC:2.4.1.224 2.4.1.225]
131527582  exostosin-1 [KO:K02366] [EC:2.4.1.224 2.4.1.225]
131521901  ext1a; exostosin-1a [KO:K02366] [EC:2.4.1.224 2.4.1.225]
131544219  ext2; exostosin-2 [KO:K02367] [EC:2.4.1.224 2.4.1.225]
131529195  ndst1b; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1b [KO:K02576] [EC:3.5.1.- 2.8.2.8]
131553318  ndst1a; LOW QUALITY PROTEIN: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 [KO:K02576] [EC:3.5.1.- 2.8.2.8]
131551125  ndst2b; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 [KO:K02577] [EC:3.5.1.- 2.8.2.8]
131552442  ndst2a; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2 [KO:K02577] [EC:3.5.1.- 2.8.2.8]
131549081  ndst3; bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4 [KO:K02579] [EC:3.5.1.- 2.8.2.8]
131534070  glcea; glucuronic acid epimerase a isoform X1 [KO:K01793] [EC:5.1.3.17]
131544352  glceb; LOW QUALITY PROTEIN: D-glucuronyl C5-epimerase B [KO:K01793] [EC:5.1.3.17]
131523029  hs2st1a; heparan sulfate 2-O-sulfotransferase 1 [KO:K02513] [EC:2.8.2.-]
131542427  hs2st1b; heparan sulfate 2-O-sulfotransferase 1 isoform X1 [KO:K02513] [EC:2.8.2.-]
131533456  hs6st1b; heparan-sulfate 6-O-sulfotransferase 1-B [KO:K02514] [EC:2.8.2.-]
131552654  hs6st1a; heparan-sulfate 6-O-sulfotransferase 1-A [KO:K02514] [EC:2.8.2.-]
131553351  hs6st2; heparan-sulfate 6-O-sulfotransferase 2 isoform X1 [KO:K08102] [EC:2.8.2.-]
131541809  hs6st3a; heparan-sulfate 6-O-sulfotransferase 3-B [KO:K08103] [EC:2.8.2.-]
131546439  hs6st3b; heparan-sulfate 6-O-sulfotransferase 3-B [KO:K08103] [EC:2.8.2.-]
131552301  hs3st1l1; heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like1 [KO:K01024] [EC:2.8.2.23]
131553438  hs3st1; heparan sulfate glucosamine 3-O-sulfotransferase 1 [KO:K01024] [EC:2.8.2.23]
131540293  hs3st1l2; heparan sulfate (glucosamine) 3-O-sulfotransferase 1-like 2 [KO:K01024] [EC:2.8.2.23]
131537315  hs3st2; heparan sulfate glucosamine 3-O-sulfotransferase 2 [KO:K07808] [EC:2.8.2.29]
131533682  hs3st3b1a; heparan sulfate glucosamine 3-O-sulfotransferase 3B1a [KO:K07809] [EC:2.8.2.30]
131551116  hs3st3l; heparan sulfate (glucosamine) 3-O-sulfotransferase 3-like [KO:K07809] [EC:2.8.2.30]
131551410  hs3st3b1b; heparan sulfate glucosamine 3-O-sulfotransferase 3B1b [KO:K07809] [EC:2.8.2.30]
131551411  si:ch211-216b21.2; heparan sulfate glucosamine 3-O-sulfotransferase 3A1 [KO:K07809] [EC:2.8.2.30]
131527663  heparan sulfate glucosamine 3-O-sulfotransferase 5-like [KO:K08104] [EC:2.8.2.23]
Compound
C00033  Acetate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C02189  [Protein]-L-serine
G00154   
G00155   
G00156   
G00157   
G00162   
G00163   
G00164   
Reference
  Authors
Kim BT, Kitagawa H, Tamura J, Saito T, Kusche-Gullberg M, Lindahl U, Sugahara K
  Title
Human tumor suppressor EXT gene family members EXTL1 and EXTL3 encode alpha 1,4- N-acetylglucosaminyltransferases that likely are involved in heparan sulfate/ heparin biosynthesis.
  Journal
Proc Natl Acad Sci U S A 98:7176-81 (2001)
DOI:10.1073/pnas.131188498
Reference
  Authors
Kitagawa H, Shimakawa H, Sugahara K
  Title
The tumor suppressor EXT-like gene EXTL2 encodes an alpha1, 4-N-acetylhexosaminyltransferase that transfers N-acetylgalactosamine and N-acetylglucosamine to the common glycosaminoglycan-protein linkage region. The key enzyme for the chain initiation of heparan sulfate.
  Journal
J Biol Chem 274:13933-7 (1999)
DOI:10.1074/jbc.274.20.13933
Reference
PMID:9756849
  Authors
Lind T, Tufaro F, McCormick C, Lindahl U, Lidholt K
  Title
The putative tumor suppressors EXT1 and EXT2 are glycosyltransferases required for the biosynthesis of heparan sulfate.
  Journal
J Biol Chem 273:26265-8 (1998)
DOI:10.1074/jbc.273.41.26265
Reference
  Authors
Li JP, Gong F, El Darwish K, Jalkanen M, Lindahl U.
  Title
Characterization of the D-glucuronyl C5-epimerase involved in the biosynthesis of heparin and heparan sulfate.
  Journal
J Biol Chem 276:20069-77 (2001)
DOI:10.1074/jbc.M011783200
Reference
  Authors
Habuchi O
  Title
Diversity and functions of glycosaminoglycan sulfotransferases.
  Journal
Biochim Biophys Acta 1474:115-27 (2000)
DOI:10.1016/S0304-4165(00)00016-7
Reference
PMID:9151776
  Authors
Rosenberg RD, Shworak NW, Liu J, Schwartz JJ, Zhang L
  Title
Heparan sulfate proteoglycans of the cardiovascular system. Specific structures emerge but how is synthesis regulated?
  Journal
J Clin Invest 99:2062-70 (1997)
DOI:10.1172/JCI119377
Reference
PMID:9988768
  Authors
Liu J, Shworak NW, Sinay P, Schwartz JJ, Zhang L, Fritze LM, Rosenberg RD
  Title
Expression of heparan sulfate D-glucosaminyl 3-O-sulfotransferase isoforms reveals novel substrate specificities.
  Journal
J Biol Chem 274:5185-92 (1999)
DOI:10.1074/jbc.274.8.5185
Reference
  Authors
Shukla D, Liu J, Blaiklock P, Shworak NW, Bai X, Esko JD, Cohen GH, Eisenberg RJ, Rosenberg RD, Spear PG
  Title
A novel role for 3-O-sulfated heparan sulfate in herpes simplex virus 1 entry.
  Journal
Cell 99:13-22 (1999)
DOI:10.1016/S0092-8674(00)80058-6
Reference
  Authors
Moon AF, Edavettal SC, Krahn JM, Munoz EM, Negishi M, Linhardt RJ, Liu J, Pedersen LC
  Title
Structural analysis of the sulfotransferase (3-o-sulfotransferase isoform 3) involved in the biosynthesis of an entry receptor for herpes simplex virus 1.
  Journal
J Biol Chem 279:45185-93 (2004)
DOI:10.1074/jbc.M405013200
Reference
  Authors
Chen J, Liu J
  Title
Characterization of the structure of antithrombin-binding heparan sulfate generated by heparan sulfate 3-O-sulfotransferase 5.
  Journal
Biochim Biophys Acta 1725:190-200 (2005)
DOI:10.1016/j.bbagen.2005.06.012
Related
pathway
omc00531  Glycosaminoglycan degradation
KO pathway
ko00534   
LinkDB

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