KEGG   PATHWAY: oor04136
Entry
oor04136                    Pathway                                
Name
Autophagy - other - Orcinus orca (killer whale)
Description
Autophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either in a housekeeping capacity or during stress and senescence. The process of autophagy could be divided into several stages: induction, vesicle nucleation, elongation and closure, and fusion and digestion. Most essential autophagic machineries are conserved throughout eukaryotes (see map04140 for animals and map04138 for fungi). This map is for other eukaryotes including plants and protists, where autophagy related genes (ATGs) play similar roles in the life cycle. However, autophagy has been relatively less studied in lower eukaryotes.
Class
Cellular Processes; Transport and catabolism
Pathway map
oor04136  Autophagy - other
oor04136

Other DBs
GO: 0006914
Organism
Orcinus orca (killer whale) [GN:oor]
Gene
101269256  GABARAPL1; gamma-aminobutyric acid receptor-associated protein-like 1 [KO:K08341]
101270058  IGBP1; immunoglobulin-binding protein 1 isoform X1 [KO:K17606]
101271817  ATG5; autophagy protein 5 isoform X1 [KO:K08339]
101271962  ATG4C; cysteine protease ATG4C isoform X1 [KO:K08342] [EC:3.4.22.-]
101273072  PIK3C3; phosphatidylinositol 3-kinase catalytic subunit type 3 isoform X2 [KO:K00914] [EC:2.7.1.137]
101273125  ATG101; autophagy-related protein 101 [KO:K19730]
101273777  ATG3; ubiquitin-like-conjugating enzyme ATG3 [KO:K08343]
101273808  ATG9B; LOW QUALITY PROTEIN: autophagy-related protein 9B [KO:K17907]
101274009  GABARAP; gamma-aminobutyric acid receptor-associated protein [KO:K08341]
101275081  MLST8; target of rapamycin complex subunit LST8 isoform X2 [KO:K08266]
101277378  ATG2B; autophagy-related protein 2 homolog B isoform X2 [KO:K17906]
101278206  BECN2; beclin-2 [KO:K08334]
101278758  ATG16L1; autophagy-related protein 16-1 isoform X3 [KO:K17890]
101278800  WIPI2; WD repeat domain phosphoinositide-interacting protein 2 isoform X3 [KO:K17908]
101279066  WIPI1; WD repeat domain phosphoinositide-interacting protein 1 isoform X1 [KO:K17908]
101279583  ATG4D; cysteine protease ATG4D isoform X1 [KO:K08342] [EC:3.4.22.-]
101280755  [KO:K08341]
101281629  ATG2A; autophagy-related protein 2 homolog A isoform X3 [KO:K17906]
101282029  PIK3R4; phosphoinositide 3-kinase regulatory subunit 4 [KO:K08333] [EC:2.7.11.1]
101282700  [KO:K04382] [EC:3.1.3.16]
101284117  ATG10; ubiquitin-like-conjugating enzyme ATG10 isoform X1 [KO:K17888]
101284249  MTOR; serine/threonine-protein kinase mTOR isoform X1 [KO:K07203] [EC:2.7.11.1]
101285631  ATG4B; cysteine protease ATG4B isoform X2 [KO:K08342] [EC:3.4.22.-]
101285840  ULK2; serine/threonine-protein kinase ULK2 isoform X2 [KO:K08269] [EC:2.7.11.1]
101286814  PPP2CB; serine/threonine-protein phosphatase 2A catalytic subunit beta isoform isoform X1 [KO:K04382] [EC:3.1.3.16]
101287309  [KO:K08342] [EC:3.4.22.-]
101287436  BECN1; beclin-1 isoform X3 [KO:K08334]
101288065  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
101288098  ATG13; autophagy-related protein 13 isoform X4 [KO:K08331]
101289109  PPP2CA; serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform [KO:K04382] [EC:3.1.3.16]
101289193  ATG4A; cysteine protease ATG4A isoform X3 [KO:K08342] [EC:3.4.22.-]
101290397  RPTOR; regulatory-associated protein of mTOR isoform X5 [KO:K07204]
105748016  ATG9A; LOW QUALITY PROTEIN: autophagy-related protein 9A [KO:K17907]
105748238  ATG7; ubiquitin-like modifier-activating enzyme ATG7 isoform X2 [KO:K08337]
117198239  [KO:K08336]
Compound
C00350  Phosphatidylethanolamine
C01194  1-Phosphatidyl-D-myo-inositol
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
Reference
  Authors
Duszenko M, Ginger ML, Brennand A, Gualdron-Lopez M, Colombo MI, Coombs GH, Coppens I, Jayabalasingham B, Langsley G, de Castro SL, Menna-Barreto R, Mottram JC, Navarro M, Rigden DJ, Romano PS, Stoka V, Turk B, Michels PA
  Title
Autophagy in protists.
  Journal
Autophagy 7:127-58 (2011)
DOI:10.4161/auto.7.2.13310
Reference
  Authors
Avin-Wittenberg T, Honig A, Galili G
  Title
Variations on a theme: plant autophagy in comparison to yeast and mammals.
  Journal
Protoplasma 249:285-99 (2012)
DOI:10.1007/s00709-011-0296-z
Reference
  Authors
Liu Y, Bassham DC
  Title
Autophagy: pathways for self-eating in plant cells.
  Journal
Annu Rev Plant Biol 63:215-37 (2012)
DOI:10.1146/annurev-arplant-042811-105441
Reference
  Authors
Yoshimoto K
  Title
Beginning to understand autophagy, an intracellular self-degradation system in plants.
  Journal
Plant Cell Physiol 53:1355-65 (2012)
DOI:10.1093/pcp/pcs099
Reference
  Authors
Li F, Chung T, Vierstra RD
  Title
AUTOPHAGY-RELATED11 plays a critical role in general autophagy- and senescence-induced mitophagy in Arabidopsis.
  Journal
Plant Cell 26:788-807 (2014)
DOI:10.1105/tpc.113.120014
Reference
  Authors
Michaeli S, Galili G, Genschik P, Fernie AR, Avin-Wittenberg T
  Title
Autophagy in Plants--What's New on the Menu?
  Journal
Trends Plant Sci 21:134-44 (2016)
DOI:10.1016/j.tplants.2015.10.008
Reference
  Authors
Yang X, Bassham DC
  Title
New Insight into the Mechanism and Function of Autophagy in Plant Cells.
  Journal
Int Rev Cell Mol Biol 320:1-40 (2015)
DOI:10.1016/bs.ircmb.2015.07.005
KO pathway
ko04136   

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