KEGG   PATHWAY: panu03030
Entry
panu03030                   Pathway                                
Name
DNA replication - Papio anubis (olive baboon)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
panu03030  DNA replication
panu03030

Organism
Papio anubis (olive baboon) [GN:panu]
Gene
100997559  [KO:K02327] [EC:2.7.7.7]
100998595  MCM3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
101000051  MCM4; DNA replication licensing factor MCM4 isoform X2 [KO:K02212] [EC:5.6.2.3]
101000184  MCM5; DNA replication licensing factor MCM5 isoform X1 [KO:K02209] [EC:5.6.2.3]
101000988  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 isoform X4 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
101001377  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
101002334  [KO:K10744]
101002449  RFC1; replication factor C subunit 1 [KO:K10754]
101002859  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
101003042  LIG1; LOW QUALITY PROTEIN: DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
101004377  RPA2; replication protein A 32 kDa subunit isoform X1 [KO:K10739]
101004436  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
101005079  RNASEH1; ribonuclease H1 precursor [KO:K03469] [EC:3.1.26.4]
101008269  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
101012085  POLD2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
101015771  RNASEH2C; ribonuclease H2 subunit C isoform X3 [KO:K10745]
101016590  PCNA; proliferating cell nuclear antigen [KO:K04802]
101016601  POLE; LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
101016627  RFC4; replication factor C subunit 4 isoform X1 [KO:K10755]
101017332  RFC2; replication factor C subunit 2 isoform X1 [KO:K10755]
101017924  RPA1; replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
101019820  RPA3; replication protein A 14 kDa subunit [KO:K10740]
101019925  POLD4; DNA polymerase delta subunit 4 isoform X1 [KO:K03505]
101021390  RPA4; replication protein A 30 kDa subunit [KO:K10741]
101021852  PRIM2; DNA primase large subunit [KO:K02685]
101022033  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
101023456  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
101024032  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
101025090  POLA2; DNA polymerase alpha subunit B isoform X1 [KO:K02321]
101025211  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
101026290  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X3 [KO:K03111]
101026603  RFC5; replication factor C subunit 5 isoform X1 [KO:K10756]
101026689  POLE2; DNA polymerase epsilon subunit 2 isoform X1 [KO:K02325] [EC:2.7.7.7]
101026886  RFC3; replication factor C subunit 3 isoform X2 [KO:K10756]
103878140  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
103880264  PRIM1; LOW QUALITY PROTEIN: DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
116268610  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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