KEGG   PATHWAY: aell03430
Entry
aell03430                   Pathway                                
Name
Mismatch repair - Arcobacter ellisii
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
aell03430  Mismatch repair
aell03430

Other DBs
GO: 0006298
Organism
Arcobacter ellisii [GN:aell]
Gene
AELL_0616  mutS; DNA mismatch repair ATPase [KO:K03555]
AELL_1674  mutS2; DNA mismatch binding protein, MutS2 family [KO:K07456]
AELL_2574  UvrD/REP family helicase [KO:K03657] [EC:5.6.2.4]
AELL_0704  rep; ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
AELL_0565  xseA; exodeoxyribonuclease VII, large subunit [KO:K03601] [EC:3.1.11.6]
AELL_1157  xseB; exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
AELL_1548  DEDDh 3'-5' exonuclease domain family protein [KO:K10857] [EC:3.1.11.-]
AELL_2751  recJ; single-stranded DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
AELL_0389  ssb; single-stranded DNA binding protein [KO:K03111]
AELL_2757  dnaE; DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
AELL_0002  dnaN; DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
AELL_0428  dnaX; DNA polymerase III, gamma and tau subunits [KO:K02343] [EC:2.7.7.7]
AELL_0387  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
AELL_1476  holB; DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
AELL_0648  dnaQ1; DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
AELL_0654  dnaQ2; DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
AELL_0998  dnaQ3; DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
AELL_1692  DEDDh 3'-5' exonuclease domain family protein [KO:K02342] [EC:2.7.7.7]
AELL_1596  ligA; DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
AELL_1324  hypothetical protein [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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