KEGG   PATHWAY: aez03030
Entry
aez03030                    Pathway                                
Name
DNA replication - Aeromicrobium chenweiae
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
aez03030  DNA replication
aez03030

Organism
Aeromicrobium chenweiae [GN:aez]
Gene
C3E78_02260  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
C3E78_02385  hypothetical protein [KO:K02342] [EC:2.7.7.7]
C3E78_07005  DEDD exnuclease domain-containing protein [KO:K02342] [EC:2.7.7.7]
C3E78_07240  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
C3E78_01285  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
C3E78_01595  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
C3E78_05835  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
C3E78_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
C3E78_17840  dnaB; replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
C3E78_06285  DNA primase [KO:K02316] [EC:2.7.7.101]
C3E78_09940  single-stranded DNA-binding protein [KO:K03111]
C3E78_13030  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
C3E78_06470  bifunctional RNase H/acid phosphatase [KO:K22316] [EC:3.1.26.4 3.1.3.73]
C3E78_11650  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
C3E78_07430  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
C3E78_12075  DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
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