KEGG   PATHWAY: ajd03430
Entry
ajd03430                    Pathway                                
Name
Mismatch repair - Aeromonas jandaei
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ajd03430  Mismatch repair
ajd03430

Other DBs
GO: 0006298
Organism
Aeromonas jandaei [GN:ajd]
Gene
I6H43_13020  mutS; DNA mismatch repair protein MutS [KO:K03555]
I6H43_06750  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
I6H43_07605  mutH; DNA mismatch repair endonuclease MutH [KO:K03573]
I6H43_11140  uvrD; DNA helicase II [KO:K03657] [EC:5.6.2.4]
I6H43_20740  sbcB; exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
I6H43_20210  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
I6H43_05940  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
I6H43_15815  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
I6H43_08265  single-stranded DNA-binding protein [KO:K03111]
I6H43_05280  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
I6H43_10685  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
I6H43_01050  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
I6H43_15755  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
I6H43_00080  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
I6H43_18300  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
I6H43_20375  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
I6H43_06485  DUF3283 family protein [KO:K02345] [EC:2.7.7.7]
I6H43_17660  DUF3283 family protein [KO:K02345] [EC:2.7.7.7]
I6H43_12075  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
I6H43_07300  DNA polymerase III subunit psi [KO:K02344] [EC:2.7.7.7]
I6H43_04945  hypothetical protein [KO:K01972] [EC:6.5.1.2]
I6H43_16150  Dam family site-specific DNA-(adenine-N6)-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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