KEGG   PATHWAY: amic00020
Entry
amic00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aminipila terrae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
amic00020  Citrate cycle (TCA cycle)
amic00020

Module
amic_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:amic00020]
amic_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:amic00020]
Other DBs
GO: 0006099
Organism
Aminipila terrae [GN:amic]
Gene
Ami3637_10950  citrate synthase [KO:K01647] [EC:2.3.3.1]
Ami3637_12635  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Ami3637_12630  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
Ami3637_00280  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Ami3637_10335  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
Ami3637_10340  hypothetical protein [KO:K00239] [EC:1.3.5.1]
Ami3637_10345  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
Ami3637_04970  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
Ami3637_01670  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Ami3637_08065  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Ami3637_14285  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
Ami3637_14290  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
Ami3637_14275  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
Ami3637_14280  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
Ami3637_10920  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Ami3637_16910  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
amic00010  Glycolysis / Gluconeogenesis
amic00061  Fatty acid biosynthesis
amic00071  Fatty acid degradation
amic00190  Oxidative phosphorylation
amic00220  Arginine biosynthesis
amic00250  Alanine, aspartate and glutamate metabolism
amic00280  Valine, leucine and isoleucine degradation
amic00350  Tyrosine metabolism
amic00470  D-Amino acid metabolism
amic00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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