KEGG   PATHWAY: apg03410
Entry
apg03410                    Pathway                                
Name
Base excision repair - Acetobacter pasteurianus IFO 3283-12
Description
Base excision repair (BER) is the predominant DNA damage repair pathway for the processing of small base lesions, derived from oxidation and alkylation damages. BER is normally defined as DNA repair initiated by lesion-specific DNA glycosylases and completed by either of the two sub-pathways: short-patch BER where only one nucleotide is replaced and long-patch BER where 2-13 nucleotides are replaced. Each sub-pathway of BER relies on the formation of protein complexes that assemble at the site of the DNA lesion and facilitate repair in a coordinated fashion. This process of complex formation appears to provide an increase in specificity and efficiency to the BER pathway, thereby facilitating the maintenance of genome integrity by preventing the accumulation of highly toxic repair intermediates.
Class
Genetic Information Processing; Replication and repair
Pathway map
apg03410  Base excision repair
apg03410

Other DBs
GO: 0006284 0006285 0006286 0006287 0006288
Organism
Acetobacter pasteurianus IFO 3283-12 [GN:apg]
Gene
APA12_25410  endonuclease III [KO:K10773] [EC:3.2.2.- 4.2.99.18]
APA12_25430  mutY; DNA glycosylase A/G-specific MutY [KO:K03575] [EC:3.2.2.31]
APA12_12340  formamidopyrimidine-DNA glycosylase [KO:K10563] [EC:3.2.2.23 4.2.99.18]
APA12_23560  DNA-3-methyladenine glycosylase I [KO:K01246] [EC:3.2.2.20]
APA12_16940  phage SPO1 DNA polymerase-related protein [KO:K21929] [EC:3.2.2.27]
APA12_04010  bacteriophage-type DNA polymerase [KO:K21929] [EC:3.2.2.27]
APA12_10830  exodeoxyribonuclease III [KO:K01142] [EC:3.1.11.2]
APA12_21210  exodeoxyribonuclease III [KO:K01142] [EC:3.1.11.2]
APA12_21430  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
APA12_21360  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
APA12_19090  DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Krwawicz J, Arczewska KD, Speina E, Maciejewska A, Grzesiuk E.
  Title
Bacterial DNA repair genes and their eukaryotic homologues: 1. Mutations in genes involved in base excision repair (BER) and DNA-end processors and their implication in mutagenesis and human disease.
  Journal
Acta Biochim Pol 54:413-34 (2007)
Reference
  Authors
Almeida KH, Sobol RW.
  Title
A unified view of base excision repair: lesion-dependent protein complexes regulated by post-translational modification.
  Journal
DNA Repair (Amst) 6:695-711 (2007)
DOI:10.1016/j.dnarep.2007.01.009
Reference
  Authors
Moen MN, Knaevelsrud I, Haugland GT, Grosvik K, Birkeland NK, Klungland A, Bjelland S
  Title
Uracil-DNA glycosylase of Thermoplasma acidophilum directs long-patch base excision repair, which is promoted by deoxynucleoside triphosphates and ATP/ADP, into short-patch repair.
  Journal
J Bacteriol 193:4495-508 (2011)
DOI:10.1128/JB.00233-11
Reference
  Authors
Ikeda S, Seki S.
  Title
[Base excision repair: DNA glycosylase and AP endonuclease]
  Journal
Tanpakushitsu Kakusan Koso 46:916-23 (2001)
KO pathway
ko03410   
LinkDB

DBGET integrated database retrieval system