KEGG   PATHWAY: awo00020
Entry
awo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acetobacterium woodii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
awo00020  Citrate cycle (TCA cycle)
awo00020

Module
awo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:awo00020]
awo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:awo00020]
Other DBs
GO: 0006099
Organism
Acetobacterium woodii [GN:awo]
Gene
Awo_c19610  (Si)-citrate-synthase [KO:K01647] [EC:2.3.3.1]
Awo_c03540  acnA; aconitase AcnA [KO:K01681] [EC:4.2.1.3]
Awo_c24380  icd; isocitrate dehydrogenase Icd [KO:K00030] [EC:1.1.1.41]
Awo_c29400  acoL2; TPP-dependent acetoin dehydrogenase complex E3 component dihydrolipoamide dehydrogenase AcoL2 [KO:K00382] [EC:1.8.1.4]
Awo_c01690  acoL1; TPP-dependent acetoin dehydrogenase complex E3 component, dihydrolipoamide dehydrogenase AcoL1 [KO:K00382] [EC:1.8.1.4]
Awo_c09320  lpdA1; dihydrolipoamide dehydrogenase LpdA1 [KO:K00382] [EC:1.8.1.4]
Awo_c23400  pdhD; dihydrolipoamide dehydrogenase PdhD [KO:K00382] [EC:1.8.1.4]
Awo_c12540  lpdA2; dihydrolipoyl dehydrogenase LpdA2 [KO:K00382] [EC:1.8.1.4]
Awo_c06210  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit PorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Awo_c06200  porB; pyruvate:ferredoxin oxidoreductase, beta subunit PorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Awo_c13650  fumA; fumarate hydratase alpha subunit FumA [KO:K01677] [EC:4.2.1.2]
Awo_c13660  fumB; fumarate hydratase beta subunit FumB [KO:K01678] [EC:4.2.1.2]
Awo_c26160  pyc; pyruvate carboxylase Pyc [KO:K01958] [EC:6.4.1.1]
Awo_c29410  acoC2; TPP-dependent acetoin dehydrogenase complex E2 component dihydrolipoamide acetyltransferase AcoC2 [KO:K00627] [EC:2.3.1.12]
Awo_c01700  acoC1; TPP-dependent acetoin dehydrogenase complex E2 component dihydrolipoamide acetyltransferase AcoC1 [KO:K00627] [EC:2.3.1.12]
Awo_c23410  pdhC2; pyruvate dehydrogenase E2 component, dihydrolipoyllysine-residue acetyltransferase PdhC2 [KO:K00627] [EC:2.3.1.12]
Awo_c29600  pdhC3; pyruvate dehydrogenase E2 component, dihydrolipoyllysine-residue acetyltransferase PdhC3 [KO:K00627] [EC:2.3.1.12]
Awo_c12530  pdhC1; pyruvate dehydrogenase E2 component, dihydrolipoyllysine-residue acetyltransferase PdhC1 [KO:K00627] [EC:2.3.1.12]
Awo_c24330  nifJ; pyruvate:ferredoxin oxidoreductase NifJ [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
awo00010  Glycolysis / Gluconeogenesis
awo00053  Ascorbate and aldarate metabolism
awo00061  Fatty acid biosynthesis
awo00071  Fatty acid degradation
awo00190  Oxidative phosphorylation
awo00220  Arginine biosynthesis
awo00250  Alanine, aspartate and glutamate metabolism
awo00280  Valine, leucine and isoleucine degradation
awo00350  Tyrosine metabolism
awo00470  D-Amino acid metabolism
awo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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