KEGG   PATHWAY: azr03430
Entry
azr03430                    Pathway                                
Name
Mismatch repair - Azoarcus sp. DD4
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
azr03430  Mismatch repair
azr03430

Other DBs
GO: 0006298
Organism
Azoarcus sp. DD4 [GN:azr]
Gene
CJ010_13125  mutS; DNA mismatch repair protein MutS [KO:K03555]
CJ010_19310  DNA mismatch repair endonuclease MutL [KO:K03572]
CJ010_19780  DNA helicase II [KO:K03657] [EC:5.6.2.4]
CJ010_02215  ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
CJ010_09080  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
CJ010_07390  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
CJ010_09285  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
CJ010_23430  single-stranded DNA-binding protein [KO:K03111]
CJ010_10740  single-stranded DNA-binding protein [KO:K03111]
CJ010_20660  single-stranded DNA-binding protein [KO:K03111]
CJ010_19755  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
CJ010_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
CJ010_05730  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
CJ010_19800  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
CJ010_09835  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
CJ010_00395  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CJ010_13135  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CJ010_24735  ethanolamine utilization protein [KO:K02342] [EC:2.7.7.7]
CJ010_15105  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CJ010_13940  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CJ010_18185  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
CJ010_13020  DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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