KEGG   PATHWAY: bhai03430
Entry
bhai03430                   Pathway                                
Name
Mismatch repair - Bacillus haikouensis
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
bhai03430  Mismatch repair
bhai03430

Other DBs
GO: 0006298
Organism
Bacillus haikouensis [GN:bhai]
Gene
KJK41_09860  mutS; DNA mismatch repair protein MutS [KO:K03555]
KJK41_11675  endonuclease MutS2 [KO:K07456]
KJK41_16535  endonuclease MutS2 [KO:K07456]
KJK41_09865  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
KJK41_11700  UvrD-helicase domain-containing protein [KO:K03657] [EC:5.6.2.4]
KJK41_01815  pcrA; DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
KJK41_02450  UvrD-helicase domain-containing protein [KO:K03657] [EC:5.6.2.4]
KJK41_04270  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
KJK41_06725  UvrD-helicase domain-containing protein [KO:K03657] [EC:5.6.2.4]
KJK41_14990  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
KJK41_14985  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
KJK41_16035  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
KJK41_21890  ssb; single-stranded DNA-binding protein [KO:K03111]
KJK41_16800  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
KJK41_09400  PolC-type DNA polymerase III [KO:K03763] [EC:2.7.7.7]
KJK41_12530  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
KJK41_00010  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
KJK41_00150  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
KJK41_15675  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
KJK41_00235  holB; DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
KJK41_20705  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
KJK41_05910  3'-5' exoribonuclease [KO:K02342] [EC:2.7.7.7]
KJK41_01820  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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