KEGG   PATHWAY: bql03430
Entry
bql03430                    Pathway                                
Name
Mismatch repair - Bacillus amyloliquefaciens LL3
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
bql03430  Mismatch repair
bql03430

Other DBs
GO: 0006298
Organism
Bacillus amyloliquefaciens LL3 [GN:bql]
Gene
LL3_01863  mutS; DNA mismatch repair recognition factor [KO:K03555]
LL3_02947  mutS; putative DNA mismatch repair enzyme [KO:K07456]
LL3_01864  mutL; DNA mismatch repair factor [KO:K03572]
LL3_03475  helD; DNA 3'-5' helicase IV [KO:K03657] [EC:5.6.2.4]
LL3_01266  yjcD; putative ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
LL3_00705  pcrA; ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
LL3_02330  uvrD; UvrD/REP helicase [KO:K03657] [EC:5.6.2.4]
LL3_02625  xseA; exodeoxyribonuclease VII (large subunit) [KO:K03601] [EC:3.1.11.6]
LL3_02624  xseB; exodeoxyribonuclease VII (small subunit) [KO:K03602] [EC:3.1.11.6]
LL3_02852  recJ; putative single-strand DNA-specific exonuclease [KO:K07462] [EC:3.1.-.-]
LL3_02269  yorK; Putative SPBc2 prophage-derived single-strand DNA-specific exonuclease yorK [KO:K07462] [EC:3.1.-.-]
LL3_03779  ssbB; single-strand DNA-binding protein [KO:K03111]
LL3_04235  ssbA; single-strand DNA-binding protein [KO:K03111]
LL3_02268  yorL; putative DNA polymerase yorL [KO:K02337] [EC:2.7.7.7]
LL3_03012  dnaE; DNA polymerase III (alpha subunit) [KO:K02337] [EC:2.7.7.7]
LL3_01818  polC; DNA polymerase III (alpha subunit) [KO:K03763] [EC:2.7.7.7]
LL3_00002  dnaN; DNA polymerase III (beta subunit) [KO:K02338] [EC:2.7.7.7]
LL3_00021  dnaX; DNA polymerase III (gamma and tau subunits) [KO:K02343] [EC:2.7.7.7]
LL3_02751  holA; DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
LL3_00033  holB; DNA polymerase III delta'' subunit [KO:K02341] [EC:2.7.7.7]
LL3_00706  ligA; DNA ligase [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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