KEGG   PATHWAY: braz03030
Entry
braz03030                   Pathway                                
Name
DNA replication - Bradyrhizobium sp. C-145
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
braz03030  DNA replication
braz03030

Organism
Bradyrhizobium sp. C-145 [GN:braz]
Gene
LRP30_37355  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
LRP30_40565  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
LRP30_40695  3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
LRP30_44860  dnaQ; DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
LRP30_02890  VRR-NUC domain-containing protein [KO:K02342] [EC:2.7.7.7]
LRP30_21960  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
LRP30_02300  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
LRP30_20140  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
LRP30_00040  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
LRP30_18035  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
LRP30_43920  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
LRP30_17830  replicative DNA helicase [KO:K02314] [EC:5.6.2.3]
LRP30_34075  dnaG; DNA primase [KO:K02316] [EC:2.7.7.101]
LRP30_20800  single-stranded DNA-binding protein [KO:K03111]
LRP30_03605  rnhA; ribonuclease HI [KO:K03469] [EC:3.1.26.4]
LRP30_10530  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
LRP30_02220  polA; DNA polymerase I [KO:K02335] [EC:2.7.7.7]
LRP30_35100  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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