KEGG   PATHWAY: bter03030
Entry
bter03030                   Pathway                                
Name
DNA replication - Bombus terrestris (buff-tailed bumblebee)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
bter03030  DNA replication
bter03030

Organism
Bombus terrestris (buff-tailed bumblebee) [GN:bter]
Gene
100651506  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
100646171  ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
100649172  replication protein A 70 kDa DNA-binding subunit isoform X1 [KO:K07466]
100646427  proliferating cell nuclear antigen [KO:K04802]
100646210  LOW QUALITY PROTEIN: DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
100644405  flap endonuclease 1 isoform X1 [KO:K04799] [EC:3.1.-.-]
100644633  LOW QUALITY PROTEIN: DNA ligase 1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
100652009  DNA polymerase alpha catalytic subunit isoform X1 [KO:K02320] [EC:2.7.7.7]
100644719  DNA polymerase alpha subunit B isoform X1 [KO:K02321]
100645961  DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
100644033  DNA primase large subunit [KO:K02685]
100645754  probable DNA primase large subunit [KO:K02685]
100645285  DNA polymerase delta catalytic subunit isoform X2 [KO:K02327] [EC:2.7.7.7]
100644725  DNA polymerase delta small subunit [KO:K02328]
100649501  DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
100647297  DNA polymerase delta subunit 3-like [KO:K03504]
100644263  LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
100648247  LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
100642846  DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
100651831  LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
100647256  DNA replication licensing factor Mcm2 [KO:K02540] [EC:5.6.2.3]
100644457  DNA replication licensing factor Mcm3 [KO:K02541] [EC:5.6.2.3]
100649788  DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
100650765  LOW QUALITY PROTEIN: DNA replication licensing factor Mcm5 [KO:K02209] [EC:5.6.2.3]
100643343  DNA replication licensing factor Mcm6 [KO:K02542] [EC:5.6.2.3]
100650433  DNA replication licensing factor Mcm7 [KO:K02210] [EC:5.6.2.3]
100647738  replication protein A 32 kDa subunit [KO:K10739]
100650287  replication protein A 32 kDa subunit [KO:K10739]
100652168  uncharacterized protein LOC100652168 [KO:K10740]
100648012  LOW QUALITY PROTEIN: replication factor C subunit 1 [KO:K10754]
100650425  replication factor C subunit 2 [KO:K10755]
100646764  replication factor C subunit 2 [KO:K10755]
100651216  replication factor C subunit 4 [KO:K10755]
100651297  replication factor C subunit 3 isoform X1 [KO:K10756]
100643052  replication factor C subunit 5 [KO:K10756]
100650946  ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
100650554  LOW QUALITY PROTEIN: ribonuclease H2 subunit B [KO:K10744]
100648047  ribonuclease H2 subunit C [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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