KEGG   PATHWAY: cace00020
Entry
cace00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium aceticum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cace00020  Citrate cycle (TCA cycle)
cace00020

Module
cace_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cace00020]
Other DBs
GO: 0006099
Organism
Clostridium aceticum [GN:cace]
Gene
CACET_c05310  icd; isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
CACET_c10270  lpdA; dihydrolipoamide dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
CACET_c05010  pdhD; dihydrolipoyl dehydrogenase PdhD [KO:K00382] [EC:1.8.1.4]
CACET_c34910  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CACET_c37970  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CACET_c34900  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CACET_c37960  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CACET_c34890  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CACET_c37950  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CACET_c34920  2-oxoglutarate ferredoxin oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
CACET_c37980  2-oxoglutarate ferredoxin oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
CACET_c34400  fumA; fumarate hydratase alpha subunit [KO:K01677] [EC:4.2.1.2]
CACET_c34390  fumB; fumarate hydratase class I, anaerobic [KO:K01678] [EC:4.2.1.2]
CACET_c05600  pyc; pyruvate carboxylase Pyc [KO:K01958] [EC:6.4.1.1]
CACET_c05000  pdhC; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase component PdhC [KO:K00627] [EC:2.3.1.12]
CACET_c05520  porA:pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
CACET_c25340  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit PorA [KO:K00169] [EC:1.2.7.1]
CACET_c05530  porB1; pyruvate:ferredoxin oxidoreductase, beta subunit PorB [KO:K00170] [EC:1.2.7.1]
CACET_c25350  porB2; pyruvate:ferredoxin oxidoreductase, beta subunit PorB [KO:K00170] [EC:1.2.7.1]
CACET_c05500  porG1; pyruvate:ferredoxin oxidoreductase, gamma subunit PorG [KO:K00172] [EC:1.2.7.1]
CACET_c25360  porG2; pyruvate:ferredoxin oxidoreductase, gamma subunit PorG [KO:K00172] [EC:1.2.7.1]
CACET_c05510  porD1; pyruvate:ferredoxin oxidoreductase, delta subunit PorD [KO:K00171] [EC:1.2.7.1]
CACET_c25370  porD2; pyruvate:ferredoxin oxidoreductase, delta subunit PorD [KO:K00171] [EC:1.2.7.1]
CACET_c10140  nifJ1; pyruvate-flavodoxin oxidoreductase NifJ [KO:K03737] [EC:1.2.7.1 1.2.7.-]
CACET_c37600  nifJ2; pyruvate-flavodoxin oxidoreductase NifJ [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cace00010  Glycolysis / Gluconeogenesis
cace00053  Ascorbate and aldarate metabolism
cace00061  Fatty acid biosynthesis
cace00071  Fatty acid degradation
cace00190  Oxidative phosphorylation
cace00220  Arginine biosynthesis
cace00250  Alanine, aspartate and glutamate metabolism
cace00280  Valine, leucine and isoleucine degradation
cace00350  Tyrosine metabolism
cace00470  D-Amino acid metabolism
cace00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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