KEGG   PATHWAY: caci00020
Entry
caci00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Cloacimonas acidaminovorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
caci00020  Citrate cycle (TCA cycle)
caci00020

Module
caci_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:caci00020]
Other DBs
GO: 0006099
Organism
Candidatus Cloacimonas acidaminovorans [GN:caci]
Gene
CLOAM1756  lpdA; Dihydrolipoyl dehydrogenase (E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes) (Dihydrolipoamide dehydrogenase) (Glycine cleavage system L protein) [KO:K00382] [EC:1.8.1.4]
CLOAM0297  korA; 2-oxoglutarate ferredoxin oxidoreductase, alpha chain [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CLOAM1002  vorA; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CLOAM0296  korB; 2-oxoglutarate ferredoxin oxidoreductase, beta chain [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CLOAM1003  vorB; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CLOAM0295  korC; 2-oxoglutarate ferredoxin oxidoreductase, gamma chain [KO:K00177] [EC:1.2.7.3]
CLOAM1004  vorC; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit [KO:K00177] [EC:1.2.7.3]
CLOAM0298  putative 2-oxoglutarate ferredoxin oxidoreductase, 4Fe-4S ferredoxin subunit, delta chain (korD) (fdx module) [KO:K00176] [EC:1.2.7.3]
CLOAM1001  vorD; pyruvate:ferredoxin and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit (ferredoxin) [KO:K00176] [EC:1.2.7.3]
CLOAM0022  Tartrate dehydratase alpha subunit (ttdA)/Fumarate hydratase class I,alpha chain (N-terminal) [KO:K01677] [EC:4.2.1.2]
CLOAM0023  tartrate dehydratase beta subunit (ttdB)/fumarate hydratase class I, beta chain (C-terminal) [KO:K01678] [EC:4.2.1.2]
CLOAM1717  putative S-methylmalonyl-CoA carboxyltransferase (Transcarboxylase) 5S and 1.3S subunits [KO:K01960] [EC:6.4.1.1]
CLOAM1163  conserved hypothetical protein [KO:K01610] [EC:4.1.1.49]
CLOAM0324  putative pyruvate-ferredoxin oxidoreductase (por-like) or pyruvate-flavodoxin oxidoreductase (ydbK-like), 4Fe-4S domain [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
caci00010  Glycolysis / Gluconeogenesis
caci00061  Fatty acid biosynthesis
caci00071  Fatty acid degradation
caci00190  Oxidative phosphorylation
caci00220  Arginine biosynthesis
caci00250  Alanine, aspartate and glutamate metabolism
caci00280  Valine, leucine and isoleucine degradation
caci00350  Tyrosine metabolism
caci00470  D-Amino acid metabolism
caci00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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