KEGG   PATHWAY: capr00020
Entry
capr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Caproiciproducens sp. NJN-50
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
capr00020  Citrate cycle (TCA cycle)
capr00020

Module
capr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:capr00020]
capr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:capr00020]
Other DBs
GO: 0006099
Organism
Caproiciproducens sp. NJN-50 [GN:capr]
Gene
EQM14_05025  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
EQM14_06500  citrate/2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
EQM14_05355  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EQM14_08450  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EQM14_08440  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EQM14_05365  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
EQM14_04875  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EQM14_00430  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
EQM14_00435  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
EQM14_00440  2-oxoacid:acceptor oxidoreductase [KO:K00177] [EC:1.2.7.3]
EQM14_00425  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
EQM14_09225  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
EQM14_09220  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
EQM14_06535  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
EQM14_06530  fumarate hydratase [KO:K01678] [EC:4.2.1.2]
EQM14_03600  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EQM14_06525  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EQM14_05485  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EQM14_15440  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
EQM14_09370  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
EQM14_15555  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
EQM14_09995  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
capr00010  Glycolysis / Gluconeogenesis
capr00053  Ascorbate and aldarate metabolism
capr00061  Fatty acid biosynthesis
capr00071  Fatty acid degradation
capr00190  Oxidative phosphorylation
capr00220  Arginine biosynthesis
capr00250  Alanine, aspartate and glutamate metabolism
capr00280  Valine, leucine and isoleucine degradation
capr00470  D-Amino acid metabolism
capr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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