KEGG   PATHWAY: cbj03430
Entry
cbj03430                    Pathway                                
Name
Mismatch repair - Clostridium botulinum H04402 065
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
cbj03430  Mismatch repair
cbj03430

Other DBs
GO: 0006298
Organism
Clostridium botulinum H04402 065 [GN:cbj]
Gene
H04402_01794  DNA mismatch repair protein MutS [KO:K03555]
H04402_03204  recombination inhibitory protein MutS2 [KO:K07456]
H04402_00705  clostridial MutS2-related protein [KO:K07456]
H04402_01793  DNA mismatch repair protein MutL [KO:K03572]
H04402_02993  uvrd/Rep helicase family protein [KO:K03657] [EC:5.6.2.4]
H04402_01389  ATP-dependent DNA helicase UvrD/PcrA,clostridial paralog [KO:K03657] [EC:5.6.2.4]
H04402_01483  ATP-dependent DNA helicase UvrD/PcrA [KO:K03657] [EC:5.6.2.4]
H04402_03434  ATP-dependent DNA helicase rep [KO:K03657] [EC:5.6.2.4]
H04402_03357  ATP-dependent DNA helicase UvrD/PcrA [KO:K03657] [EC:5.6.2.4]
H04402_01894  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
H04402_01893  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
H04402_02843  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
H04402_03727  single-stranded DNA-binding protein [KO:K03111]
H04402_00410  single-stranded DNA-binding protein (SSB) (Helix-destabilizing protein) [KO:K03111]
H04402_03473  DNA polymerase III alpha subunit [KO:K02337] [EC:2.7.7.7]
H04402_02450  DNA polymerase III alpha subunit [KO:K03763] [EC:2.7.7.7]
H04402_00002  DNA polymerase III beta subunit [KO:K02338] [EC:2.7.7.7]
H04402_00022  DNA polymerase III subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
H04402_00051  DNA polymerase III delta prime subunit [KO:K02341] [EC:2.7.7.7]
H04402_00247  putative DNA polymerase III epsilon chain [KO:K02342] [EC:2.7.7.7]
H04402_03356  DNA ligase [KO:K01972] [EC:6.5.1.2]
H04402_02296  DNA-methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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