KEGG   PATHWAY: ccap03030
Entry
ccap03030                   Pathway                                
Name
DNA replication - Clavibacter capsici
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
ccap03030  DNA replication
ccap03030

Organism
Clavibacter capsici [GN:ccap]
Gene
AES38_10835  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AES38_08295  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AES38_09000  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
AES38_04050  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
AES38_04200  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
AES38_07380  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
AES38_00010  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
AES38_14440  helicase DnaB [KO:K02314] [EC:5.6.2.3]
AES38_07565  DNA primase [KO:K02316] [EC:2.7.7.101]
AES38_14455  single-stranded DNA-binding protein [KO:K03111]
AES38_03920  ribonuclease HI [KO:K03469] [EC:3.1.26.4]
AES38_06490  ribonuclease HII [KO:K03470] [EC:3.1.26.4]
AES38_08495  DNA polymerase I [KO:K02335] [EC:2.7.7.7]
AES38_06635  aromatic ring-opening dioxygenase LigA [KO:K01972] [EC:6.5.1.2]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   
LinkDB

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