KEGG   PATHWAY: cex00020
Entry
cex00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caldisericum exile
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cex00020  Citrate cycle (TCA cycle)
cex00020

Module
cex_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cex00020]
Other DBs
GO: 0006099
Organism
Caldisericum exile [GN:cex]
Gene
CSE_03960  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CSE_01850  korA; putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CSE_02130  korA; putative 2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CSE_10170  korA; 2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CSE_15800  korA; 2-oxoglutarate ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CSE_01860  korB; putative 2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CSE_02140  korB; putative 2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CSE_10160  korB; 2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CSE_15790  korB; 2-oxoglutarate ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CSE_02150  korC; putative 2-oxoglutarate ferredoxin oxidoreductase gamma subunit [KO:K00177] [EC:1.2.7.3]
CSE_10150  korC; 2-oxoglutarate ferredoxin oxidoreductase gamma subunit [KO:K00177] [EC:1.2.7.3]
CSE_02120  korD; putative 2-oxoglutarate ferredoxin oxidoreductase delta subunit [KO:K00176] [EC:1.2.7.3]
CSE_10180  korD; 2-oxoglutarate ferredoxin oxidoreductase delta subunit [KO:K00176] [EC:1.2.7.3]
CSE_10190  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
CSE_10200  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
CSE_06720  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
CSE_06860  porA; pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
CSE_06870  porB; pyruvate synthase subunit PorB [KO:K00170] [EC:1.2.7.1]
CSE_06840  porC; pyruvate synthase subunit PorC [KO:K00172] [EC:1.2.7.1]
CSE_06850  porD; pyruvate synthase subunit PorD [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cex00010  Glycolysis / Gluconeogenesis
cex00061  Fatty acid biosynthesis
cex00071  Fatty acid degradation
cex00190  Oxidative phosphorylation
cex00220  Arginine biosynthesis
cex00250  Alanine, aspartate and glutamate metabolism
cex00280  Valine, leucine and isoleucine degradation
cex00470  D-Amino acid metabolism
cex00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system