KEGG   PATHWAY: citz00920
Entry
citz00920                   Pathway                                
Name
Sulfur metabolism - Citrobacter tructae
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
citz00920  Sulfur metabolism
citz00920

Module
citz_M00021  Cysteine biosynthesis, serine => cysteine [PATH:citz00920]
citz_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:citz00920]
Other DBs
GO: 0006790
Organism
Citrobacter tructae [GN:citz]
Gene
E4Z61_23605  sulfate ABC transporter substrate-binding protein [KO:K02048]
E4Z61_16130  sulfate ABC transporter substrate-binding protein [KO:K23163]
E4Z61_23610  cysT; sulfate/thiosulfate ABC transporter permease CysT [KO:K02046]
E4Z61_23615  cysW; sulfate/thiosulfate ABC transporter permease CysW [KO:K02047]
E4Z61_23620  cysA; sulfate/thiosulfate ABC transporter ATP-binding protein CysA [KO:K02045] [EC:7.3.2.3]
E4Z61_09095  sulfonate ABC transporter substrate-binding protein [KO:K15553]
E4Z61_09105  ssuC; aliphatic sulfonate ABC transporter permease SsuC [KO:K15554]
E4Z61_09110  ssuB; aliphatic sulfonates ABC transporter ATP-binding protein [KO:K15555] [EC:7.6.2.14]
E4Z61_09100  ssuD; FMNH2-dependent alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
E4Z61_09090  ssuE; NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
E4Z61_21705  cysN; sulfate adenylyltransferase subunit CysN [KO:K00956] [EC:2.7.7.4]
E4Z61_21700  cysD; sulfate adenylyltransferase subunit CysD [KO:K00957] [EC:2.7.7.4]
E4Z61_21710  cysC; adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
E4Z61_14440  cysQ; 3'(2'),5'-bisphosphate nucleotidase CysQ [KO:K01082] [EC:3.1.3.7]
E4Z61_21690  cysH; phosphoadenosine phosphosulfate reductase [KO:K00390] [EC:1.8.4.8 1.8.4.10]
E4Z61_21680  cysJ; NADPH-dependent assimilatory sulfite reductase flavoprotein subunit [KO:K00380] [EC:1.8.1.2]
E4Z61_21685  cysI; assimilatory sulfite reductase (NADPH) hemoprotein subunit [KO:K00381] [EC:1.8.1.2]
E4Z61_04105  ttrA; tetrathionate reductase subunit TtrA [KO:K08357]
E4Z61_04115  ttrB; tetrathionate reductase subunit TtrB [KO:K08358]
E4Z61_04110  ttrC; tetrathionate reductase subunit TtrC [KO:K08359]
E4Z61_02730  phsA; thiosulfate reductase PhsA [KO:K08352] [EC:1.8.5.5]
E4Z61_02735  phsB; thiosulfate reductase electron transport protein PhsB [KO:K08353]
E4Z61_02740  thiosulfate reductase cytochrome B subunit [KO:K08354]
E4Z61_04155  thiosulfate reductase cytochrome B subunit [KO:K08354]
E4Z61_23230  sseA; 3-mercaptopyruvate sulfurtransferase [KO:K01011] [EC:2.8.1.1 2.8.1.2]
E4Z61_18520  glpE; thiosulfate sulfurtransferase GlpE [KO:K02439] [EC:2.8.1.1]
E4Z61_17675  cysE; serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
E4Z61_23665  cysK; cysteine synthase A [KO:K01738] [EC:2.5.1.47]
E4Z61_11330  PLP-dependent cysteine synthase family protein [KO:K01738] [EC:2.5.1.47]
E4Z61_15635  metA; homoserine O-succinyltransferase [KO:K00651] [EC:2.3.1.46 2.3.1.31]
E4Z61_16015  metB; cystathionine gamma-synthase [KO:K01739] [EC:2.5.1.48]
E4Z61_09325  dmsA; dimethylsulfoxide reductase subunit A [KO:K07306] [EC:1.8.5.3]
E4Z61_04775  dmsB; dimethylsulfoxide reductase subunit B [KO:K07307]
E4Z61_09320  dmsB; dimethylsulfoxide reductase subunit B [KO:K07307]
E4Z61_09315  dimethyl sulfoxide reductase anchor subunit [KO:K07308]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
citz00260  Glycine, serine and threonine metabolism
citz00270  Cysteine and methionine metabolism
citz00680  Methane metabolism
citz00720  Other carbon fixation pathways
KO pathway
ko00920   
LinkDB

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