PATHWAY: cobe00240 Help Entry cobe00240                   Pathway                                 Name Pyrimidine metabolism - Cobetia sp. AM6 Class Metabolism; Nucleotide metabolism BRITE hierarchy Pathway map cobe00240   Pyrimidine metabolism Ortholog table Module cobe_M00046   Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:cobe00240] cobe_M00052   Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:cobe00240] cobe_M00053   Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:cobe00240] cobe_M00938   Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:cobe00240] Other DBs GO:  0006220 0006213 Organism Cobetia sp. AM6 [GN:cobe] Gene CLAM6_01620   carB; carbamoyl-phosphate synthase large chain [KO:K01955] [EC:6.3.5.5] CLAM6_01610   carA; carbamoyl-phosphate synthase small chain [KO:K01956] [EC:6.3.5.5] CLAM6_00420   pyrB; aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2] CLAM6_00430   pyrC'; dihydroorotase-like protein [KO:K01465] [EC:3.5.2.3] CLAM6_17330   dihydroorotase [KO:K01465] [EC:3.5.2.3] CLAM6_28480   pyrD; dihydroorotate dehydrogenase (quinone) [KO:K00254] [EC:1.3.5.2] CLAM6_34150   pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10] CLAM6_07740   pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23] CLAM6_31590   pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22] CLAM6_29430   ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6] CLAM6_09360   nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.9] CLAM6_06780   Maf-like protein [KO:K06287] [EC:3.6.1.-] CLAM6_33910   ygjP; metal-dependent hydrolase [KO:K07043] [EC:3.6.1.-] CLAM6_31030   pyrG; CTP synthase [KO:K01937] [EC:6.3.4.2] CLAM6_27260   cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25] CLAM6_16050   nutA; 5'-nucleotidase [KO:K11751] [EC:3.1.3.5 3.6.1.45] CLAM6_26660   surE; 5'-nucleotidase SurE [KO:K03787] [EC:3.1.3.5 3.1.3.6] CLAM6_25130   UPF0345 protein [KO:K09913] [EC:2.4.2.1 2.4.2.2] CLAM6_24130   upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9] CLAM6_00410   pyrR; bifunctional protein PyrR [KO:K02825] [EC:2.4.2.9] CLAM6_15100   cpdB; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase [KO:K01119] [EC:3.1.4.16 3.1.3.6] CLAM6_18690   rihA; pyrimidine-specific ribonucleoside hydrolase RihA [KO:K01250] [EC:3.2.2.-] CLAM6_23410   LOG family protein [KO:K06966] [EC:3.2.2.10 3.2.2.-] CLAM6_09710   cdd; tRNA-specific adenosine deaminase [KO:K03365] [EC:3.5.4.1 3.5.4.21] CLAM6_23570   dcd; dCTP deaminase [KO:K01494] [EC:3.5.4.13] CLAM6_03630   nrdA; ribonucleoside-diphosphate reductase [KO:K00525] [EC:1.17.4.1] CLAM6_03620   nrdB; ribonucleoside-diphosphate reductase subunit beta [KO:K00526] [EC:1.17.4.1] CLAM6_08970   hypothetical protein [KO:K00943] [EC:2.7.4.9] CLAM6_31870   dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23] CLAM6_27050   thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45] CLAM6_04250   oxidoreductase [KO:K17722] [EC:1.3.1.1] CLAM6_04240   dihydropyrimidine dehydrogenase subunit B [KO:K17723] [EC:1.3.1.1] CLAM6_04260   dht; D-hydantoinase/dihydropyrimidinase [KO:K01464] [EC:3.5.2.2] CLAM6_04270   apolipoprotein acyltransferase [KO:K01431] [EC:3.5.1.6] CLAM6_14200   Zn-dependent hydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87] CLAM6_14790   Zn-dependent hydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87] CLAM6_18830   Zn-dependent hydrolase [KO:K06016] [EC:3.5.1.6 3.5.1.87] Compound C00015   UDP C00039   DNA C00046   RNA C00055   CMP C00063   CTP C00064   L-Glutamine C00075   UTP C00086   Urea C00099   beta-Alanine C00105   UMP C00106   Uracil C00112   CDP C00119   5-Phospho-alpha-D-ribose 1-diphosphate C00169   Carbamoyl phosphate C00178   Thymine C00214   Thymidine C00222   3-Oxopropanoate C00239   dCMP C00295   Orotate C00299   Uridine C00337   (S)-Dihydroorotate C00363   dTDP C00364   dTMP C00365   dUMP C00380   Cytosine C00383   Malonate C00429   5,6-Dihydrouracil C00438   N-Carbamoyl-L-aspartate C00458   dCTP C00459   dTTP C00460   dUTP C00475   Cytidine C00526   Deoxyuridine C00672   2-Deoxy-D-ribose 1-phosphate C00705   dCDP C00813   Barbiturate C00881   Deoxycytidine C00941   3',5'-Cyclic CMP C01013   3-Hydroxypropanoate C01103   Orotidine 5'-phosphate C01168   Pseudouridine 5'-phosphate C01205   (R)-3-Amino-2-methylpropanoate C01346   dUDP C01368   3'-UMP C01563   Carbamate C02067   Pseudouridine C02170   Methylmalonate C02354   2',3'-Cyclic CMP C02355   2',3'-Cyclic UMP C02376   5-Methylcytosine C02642   3-Ureidopropionate C03997   5-Hydroxymethyldeoxycytidylate C05281   5-Methylbarbiturate C05822   3'-CMP C06198   P1,P4-Bis(5'-uridyl) tetraphosphate C11038   2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate C11039   2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate C15607   3-Oxo-3-ureidopropanoate C20231   (Z)-3-Ureidoacrylate peracid C20249   (Z)-3-Peroxyaminoacrylate C20253   Aminoacrylate C20254   Ureidoacrylate C20846   3-Oxo-3-ureidoisobutyrate C21028   (R)-5,6-Dihydrothymine C21029   (R)-3-Ureidoisobutyrate C22509   3',5'-Cyclic UMP Related pathway cobe00030   Pentose phosphate pathway cobe00220   Arginine biosynthesis cobe00250   Alanine, aspartate and glutamate metabolism cobe00280   Valine, leucine and isoleucine degradation cobe00410   beta-Alanine metabolism KO pathway ko00240     LinkDB All DBs

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