KEGG   PATHWAY: csol04144
Entry
csol04144                   Pathway                                
Name
Endocytosis - Ceratosolen solmsi marchali (fig wasp)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
csol04144  Endocytosis
csol04144

Other DBs
GO: 0006897
Organism
Ceratosolen solmsi marchali (fig wasp) [GN:csol]
Gene
105367896  ADP-ribosylation factor 6 [KO:K07941]
105361599  probable phosphatidylinositol phosphate kinase DDB_G0267588 [KO:K00889] [EC:2.7.1.68]
105363898  phospholipase D2 [KO:K01115] [EC:3.1.4.4]
105364181  dynamin isoform X1 [KO:K01528] [EC:3.6.5.5]
105365408  clathrin light chain isoform X1 [KO:K04645]
105361926  clathrin heavy chain [KO:K04646]
105362617  LOW QUALITY PROTEIN: AP-2 complex subunit alpha [KO:K11824]
105364556  AP-2 complex subunit mu [KO:K11826]
105366000  AP-2 complex subunit sigma [KO:K11827]
105367453  TGF-beta receptor type-1 isoform X1 [KO:K04674] [EC:2.7.11.30]
105364860  zinc finger FYVE domain-containing protein 16 [KO:K04679]
105366782  mothers against decapentaplegic homolog 3-like isoform X1 [KO:K23605]
105367460  LOW QUALITY PROTEIN: epidermal growth factor receptor [KO:K04361] [EC:2.7.10.1]
105365805  endophilin-A isoform X1 [KO:K11247]
105368131  endophilin-B1 [KO:K11248]
105361774  myc box-dependent-interacting protein 1 [KO:K12562]
105362515  epsin-2 isoform X1 [KO:K12471]
105366823  epidermal growth factor receptor substrate 15-like 1 [KO:K12472]
105359460  E3 ubiquitin-protein ligase Nedd-4 [KO:K10591] [EC:2.3.2.26]
105360204  E3 ubiquitin-protein ligase NRDP1 [KO:K11981] [EC:2.3.2.27]
105362528  E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
105364765  E3 ubiquitin-protein ligase Su(dx) [KO:K05633] [EC:2.3.2.26]
105369050  low density lipoprotein receptor adapter protein 1-like [KO:K12474]
105367269  uncharacterized protein LOC105367269 [KO:K12475]
105363982  G protein-coupled receptor kinase 1 [KO:K00910] [EC:2.7.11.15]
105363233  G protein-coupled receptor kinase 2 isoform X1 [KO:K08291] [EC:2.7.11.16]
105369038  arrestin homolog [KO:K04439]
105366788  beta-arrestin-1 isoform X1 [KO:K04439]
105362193  neural Wiskott-Aldrich syndrome protein [KO:K23612]
105366066  formin-like protein 3 [KO:K23612]
105361892  actin-related protein 2 isoform X1 [KO:K17260]
105362299  actin-related protein 3 [KO:K18584]
105362502  actin-related protein 2/3 complex subunit 1A [KO:K05757]
105367532  probable actin-related protein 2/3 complex subunit 2 [KO:K05758]
105362315  actin-related protein 2/3 complex subunit 3 [KO:K05756]
105367792  actin-related protein 2/3 complex subunit 4 [KO:K05755]
105359750  actin-related protein 2/3 complex subunit 5 [KO:K05754]
105368802  heat shock protein 68-like [KO:K03283]
105368644  heat shock 70 kDa protein cognate 4 [KO:K03283]
105362389  LOW QUALITY PROTEIN: heat shock 70 kDa protein cognate 4-like [KO:K03283]
105366870  WASH complex subunit 7 [KO:K18465]
105367287  WASH complex subunit strumpellin [KO:K18464]
105360784  WASH complex subunit FAM21-like [KO:K18462]
105359413  WAS protein family homolog 1-like [KO:K18461]
105361056  WASH complex subunit CCDC53 homolog [KO:K18463]
105367320  F-actin-capping protein subunit alpha [KO:K10364]
105362962  F-actin-capping protein subunit beta [KO:K10365]
105368887  vacuolar protein sorting-associated protein 29 [KO:K18467]
105363363  vacuolar protein sorting-associated protein 26B-like [KO:K18466]
105368891  vacuolar protein sorting-associated protein 35 [KO:K18468]
105362179  sorting nexin-12 [KO:K17918]
105361105  ras-related protein Rab-7a [KO:K07897]
105366498  LOW QUALITY PROTEIN: hepatocyte growth factor-regulated tyrosine kinase substrate [KO:K12182]
105366583  signal transducing adapter molecule 1 [KO:K04705]
105365976  tumor susceptibility gene 101 protein [KO:K12183]
105368517  uncharacterized protein LOC105368517 isoform X1 [KO:K12186]
105364039  vacuolar protein sorting-associated protein 28 homolog [KO:K12184]
105365424  vacuolar protein sorting-associated protein 37B [KO:K12185]
105360329  LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 37A [KO:K12185]
105362153  vacuolar-sorting protein SNF8 [KO:K12188]
105363279  vacuolar protein-sorting-associated protein 36 isoform X1 [KO:K12190]
105364663  vacuolar protein-sorting-associated protein 25 [KO:K12189]
105364386  charged multivesicular body protein 6-A [KO:K12195]
105361577  charged multivesicular body protein 4b [KO:K12194]
105367334  charged multivesicular body protein 3 [KO:K12193]
105365439  charged multivesicular body protein 2a [KO:K12191]
105361720  charged multivesicular body protein 7 [KO:K15053]
105365042  vacuolar protein sorting-associated protein 4B [KO:K12196]
105368954  vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199]
105362957  charged multivesicular body protein 1b [KO:K12197]
105360798  charged multivesicular body protein 5 [KO:K12198]
105362958  IST1 homolog [KO:K19476]
105368154  programmed cell death 6-interacting protein [KO:K12200]
105359271  maspardin-like isoform X1 [KO:K19367]
105365759  sorting nexin-2 [KO:K17917]
105359391  sorting nexin-6 isoform X1 [KO:K17920]
105365761  tyrosine-protein kinase Src64B [KO:K05704] [EC:2.7.10.2]
105361334  ras-like GTP-binding protein Rho1 isoform X1 [KO:K04513]
105365070  caveolin-3-like [KO:K12959]
105368668  ras-related protein Rab-5B [KO:K07889]
105366134  rab GTPase-binding effector protein 1 [KO:K12480]
105361278  rabenosyn-5 [KO:K12481]
105362240  protein RUFY3 isoform X1 [KO:K12482]
105362846  EH domain-containing protein 3 [KO:K12483]
105367556  vacuolar protein sorting-associated protein 45 [KO:K12479]
105362631  sorting nexin-4-like [KO:K17919]
105367264  ras-related protein Rab-10 [KO:K07903]
105364679  ras-related protein Rab-8A isoform X1 [KO:K07901]
105368985  ras-related protein Rab-35 [KO:K07876]
105365434  ras-related protein Rab-11A [KO:K07904]
105366445  rab11 family-interacting protein 2 [KO:K12484]
105361398  kinesin heavy chain isoform X1 [KO:K10396]
105359130  rab11 family-interacting protein 4 [KO:K12485]
105359501  partitioning defective 3 homolog [KO:K04237]
105363968  partitioning defective protein 6 isoform X1 [KO:K06093]
105363841  atypical protein kinase C [KO:K06069] [EC:2.7.11.13]
105368542  cdc42 homolog [KO:K04393]
105363576  cdc42 homolog [KO:K04393]
105367376  stromal membrane-associated protein 1 [KO:K12486]
105366603  ARF GTPase-activating protein GIT1 [KO:K12487]
105366241  arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 isoform X1 [KO:K12488]
105365047  ADP-ribosylation factor GTPase-activating protein 1 isoform X1 [KO:K12492]
105365504  ADP-ribosylation factor GTPase-activating protein 2 [KO:K12493]
105362351  PH and SEC7 domain-containing protein 2 isoform X1 [KO:K12494]
105361341  IQ motif and SEC7 domain-containing protein 1 [KO:K12495]
105359117  cytohesin-1 isoform X1 [KO:K18441]
105366475  brefeldin A-inhibited guanine nucleotide-exchange protein 1 [KO:K18442]
105366284  golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 [KO:K18443]
105365894  ADP-ribosylation factor 1 [KO:K07937]
105361088  ADP-ribosylation factor 2 [KO:K07939]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
csol04070  Phosphatidylinositol signaling system
csol04130  SNARE interactions in vesicular transport
csol04142  Lysosome
csol04350  TGF-beta signaling pathway
KO pathway
ko04144   
LinkDB

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